Protein Alignment pch2 and AtCDC48C

DIOPT Version :10

• Sequence 1: NP_524282.4
• Gene: pch2 / 41013
• FlyBaseID: FBgn0051453
• Length: 421
• Species: Drosophila melanogaster
• Sequence 2: NP_568114.1
• Gene: AtCDC48C / 831870
• AraportID: AT5G03340
• Length: 810
• Species: Arabidopsis thaliana
• Alignment Length: 165
• Identity: 40/165 - (24%)
• Similarity: 72/165 - (43%)
• Gaps: 36/165 - (21%)

  Fly    99 CL------HRVINAYGTVLHAEVDEKVKLEMAMERRVYEELAP-FSEYEKNVNKLKDKLNLVSTD 156
            ||      |||      .|.:|..||.|.::   |:|.|:|:| ..|.|:...:|:::...|:
plant   163 CLPGGHRGHRV------ELLSEASEKKKEKL---RKVLEKLSPEREETERGAQRLQERRREVA-- 216

  Fly   157 LEIAQKDLEKENSMTH--QESLDAIQMKYEGMKDALVTDIFASSVSKEFQLNEHMLTSMNLKRDY 219
             |.|..:.|:..::..  :|.|:|::.:       |::||..........|.| ::..:.:|:|
plant   217 -EAAAGETERVTALFRGIREELEALEKR-------LLSDISRQKEELSLTLTE-LIQQLEIKKD- 271

  Fly   220 FKKMYEMYEKAIPEVERMIATALPRPVFGVPLDEH 254
                 |:..| |..:|.:...|.|..|.....:.|
plant   272 -----ELSRK-IRHIEELCNMADPLTVLQEQWESH 300

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pch2	NP_524282.4	RecA-like_Pch2-like	115..312	CDD:410916	33/143 (23%)
AtCDC48C	NP_568114.1	CDC48	29..768	CDD:273521	40/165 (24%)