DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and PEX1

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_196464.2 Gene:PEX1 / 830746 AraportID:AT5G08470 Length:1130 Species:Arabidopsis thaliana


Alignment Length:453 Identity:100/453 - (22%)
Similarity:157/453 - (34%) Gaps:166/453 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 FLPDLTAEQTEHVHSVLLERDNGGVQPL----------KVAET-----KFRFHFYATRP------ 93
            ||.|:..:..|:.:|      :.|:.||          ::.:|     :|.||.....|      
plant   692 FLTDVIDDYGEYRNS------SCGIGPLAFVASVQSLEQIPQTLSSSGRFDFHVQLAAPATSERG 750

  Fly    94 ---------------EEGQLGLFSGEEGSDGID-------------------------------S 112
                           |:..|.|.:..||.|..|                               .
plant   751 AILKHEIQKRLLDCSEDILLNLAAKCEGYDAYDLEILVDRAVHAAIGRHLPLESNISKYNLVKED 815

  Fly   113 IVAASHALLPAAQ-----------FVGLWENLIYETGLKEKLLK-----------FALSALMFSE 155
            ...|.|..:|.|.           .:| ||::...|.:|..:.:           ||.|.|    
plant   816 FTRAMHDFVPVAMRDITKSASEGGRLG-WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPL---- 875

  Fly   156 HRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESG 220
             |:.:||       ||:||||.|||.:..|.|...|:|         .:.:....|.:|:...|.
plant   876 -RLRSNV-------LLYGPPGCGKTHIVGAAAAACSLR---------FISVKGPELLNKYIGASE 923

  Fly   221 KLVAQLFNKIAELVSDPNNLVCVL-IDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCP 284
            :.|..:|:|.|....      |:| .||.:|:|..|...::..   ..||||..||:||.::...
plant   924 QAVRDIFSKAAAAAP------CILFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLT 979

  Fly   285 NVLILATSNLAQSIDLAFV--DRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDA 347
            .|.:.|.::....:|.|.:  .|.|..|...:|......||..          ||.|::|.::|.
plant   980 GVFVFAATSRPDLLDPALLRPGRLDRLLLCDFPSPPERLEILT----------VLSRKLLMADDI 1034

  Fly   348 EEGLLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQKISLSDFLDAMLEALEQHLGEQ 410
            :   |..:|..:.|.||..|:.|                     ||   ||.|.|:.::|..:
plant  1035 D---LEPIALMTEGFSGADLQAL---------------------LS---DAQLAAVHEYLNRE 1070

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 58/221 (26%)
PEX1NP_196464.2 PEX-1N 109..182 CDD:462729
CDC48 <585..1117 CDD:273521 100/453 (22%)
RecA-like_PEX1_r2 852..1009 CDD:410934 50/186 (27%)
Blue background indicates that the domain is not in the aligned region.

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