Protein Alignment pch2 and NSF

DIOPT Version :10

• Sequence 1: NP_524282.4
• Gene: pch2 / 41013
• FlyBaseID: FBgn0051453
• Length: 421
• Species: Drosophila melanogaster
• Sequence 2: NP_192400.2
• Gene: NSF / 825830
• AraportID: AT4G04910
• Length: 742
• Species: Arabidopsis thaliana
• Alignment Length: 473
• Identity: 108/473 - (22%)
• Similarity: 191/473 - (40%)
• Gaps: 111/473 - (23%)

  Fly     3 FLSN-SDTVHVEVC----LRGNDLRSNAI-RNNVETALKAYFQTARKLPRNVSFLPDLTAE---- 57
            ||:| :|:..:.:|    :|..::..||| |.:...:.......:|.:|.....|..||.|
plant    46 FLANVADSFILSLCGHGSIRDGNIALNAIQRRHARVSTGDMVSVSRFVPPENFDLAMLTLELEFV 110

  Fly    58 ----QTEHVHSVLLERD------NGGVQPLKVAETKFRFHFYATR--------PEEGQ------- 97
                ::|.|.:.||...      |   |.|.|.: |..|.::.|.        ..|||
plant   111 KKGTKSEQVDAALLSTQLKRKYTN---QVLTVGQ-KATFEYHGTNYILTVNRADVEGQDHTNGIE 171

  Fly    98 LGLFSGE-----EGSDG-----IDSIVAASHALLPAAQF----VGLWENLIYETGLKEK---LLK 145
            .||.|.:     |.|:.     ::...|||..:....:|    :|:       .||..:   :.:
plant   172 RGLLSKDTYIVFEASNASGIKIVNQREAASSNIFKHKEFNLESLGI-------GGLGAEFADIFR 229

  Fly   146 FALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHS 210
            .|.::.:|..|......|...:.:||.||||||||.:.:.:.:.|:.:....        :|...
plant   230 RAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPKI--------VNGPE 286

  Fly   211 LFSKWFSESGKLVAQLF---NKIAELVSDPNNLVCVLIDEVESLAYARSAMSSNEPRDAM----R 268
            :.||:..|:.|.|..||   .:....:.|.:.|..::.||::::..:|.:     .||..    .
plant   287 VLSKFVGETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKSRGS-----TRDGTGVHDS 346

  Fly   269 VVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFV--DRADIRLFIGYP---GISAIREIYKGML 328
            :||.:||::|.::...|||::..:|....:|.|.:  .|.::::.|..|   |...|.:|:...:
plant   347 IVNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKM 411

  Fly   329 AELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQ----- 388
            .|....|.         |..   |.:||.|:...||..|..: :.:...|..:....:|.
plant   412 KENSFLGT---------DIN---LQELAARTKNYSGAELEGV-VKSATSYALNRQLSMDDLTKPV 463

  Fly   389 -----KISLSDFLDAMLE 401
                 ||::.|||.|:.|
plant   464 EEENIKITMEDFLHAIYE 481

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pch2	NP_524282.4	RecA-like_Pch2-like	115..312	CDD:410916	49/212 (23%)
NSF	NP_192400.2	CDC48_N	12..92	CDD:215012	10/45 (22%)
		CDC48	60..641	CDD:273521	103/459 (22%)
		RecA-like_NSF-SEC18_r1-like	216..392	CDD:410912	45/195 (23%)