DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and AT4G04180

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001319863.1 Gene:AT4G04180 / 825733 AraportID:AT4G04180 Length:600 Species:Arabidopsis thaliana


Alignment Length:428 Identity:94/428 - (21%)
Similarity:159/428 - (37%) Gaps:118/428 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LSNSDTVHVEVCLRGNDLRSNAIRNNVETALKAYFQTARKLPRNVSFLPDLTAEQTEHVHSVLLE 68
            |..||.|.||...:|:                                  ||.|:.|...|.|  
plant   235 LLTSDKVEVEFIKKGS----------------------------------LTTEELEAFVSAL-- 263

  Fly    69 RDNGGVQPLKVAETKFRFHFYATRPEEGQLGLFSGEE------------GSDGIDSIVAASHALL 121
                ||...|..:.|......:||.......:...|.            |.|.:|.|        
plant   264 ----GVAGTKAGQNKGSGSRGSTRDSSTDKSISQLESMGVRIYGVNKPLGDDSMDEI-------- 316

  Fly   122 PAAQFVGLWENLIYETGLKEKLLKFALSALMFSE----------HRVDTNVIACNRLILLHGPPG 176
                   .|:|:......|.::....|.||...|          .:.::|   ..|.:|..||||
plant   317 -------SWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESN---RPRAVLFEGPPG 371

  Fly   177 TGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLV 241
            |||||..:.:|.:..|         .|:.:...::.||::.||.:|:..:|::..||   |:..:
plant   372 TGKTSCARVIANQAGI---------PLLYVPLEAVMSKYYGESERLLGAVFSQANEL---PDGAI 424

  Fly   242 CVLIDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFVDRA 306
             :.:||:::.|.:|.:......|   ||::.:|.|:|..:....|:::|.:|..|.:|.|.:.|.
plant   425 -IFLDEIDAFAISRDSEMHEATR---RVLSVLLRQIDGFEQEKKVVVIAATNRKQDLDPALISRF 485

  Fly   307 DIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKLP 371
            |..:....|.:...:||......:|                .:..|.|||:.:..:|||.:|.:.
plant   486 DSMIMFDLPDLQTRQEIIAQYAKQL----------------SKPELVQLAQATEAMSGRDIRDVC 534

  Fly   372 LLAHAQYTSSTLFEL-----DQKISLSDFLDAMLEALE 404
            ..|...:.|..:...     :|||:|.. :...||:.|
plant   535 QGAERTWASKLIRRAKAGGEEQKITLPP-IQEYLESAE 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 49/206 (24%)
AT4G04180NP_001319863.1 RPT1 <315..537 CDD:440835 62/271 (23%)

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