Protein Alignment pch2 and AtCDC48B

DIOPT Version :10

• Sequence 1: NP_524282.4
• Gene: pch2 / 41013
• FlyBaseID: FBgn0051453
• Length: 421
• Species: Drosophila melanogaster
• Sequence 2: NP_190891.1
• Gene: AtCDC48B / 824489
• AraportID: AT3G53230
• Length: 815
• Species: Arabidopsis thaliana
• Alignment Length: 245
• Identity: 67/245 - (27%)
• Similarity: 107/245 - (43%)
• Gaps: 46/245 - (18%)

  Fly   129 LWENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIR 193
            |.|.:.|.....||..||.:|.               ::.:|.:||||.|||.|.||:|.:
plant   493 LQETVQYPVEHPEKFEKFGMSP---------------SKGVLFYGPPGCGKTLLAKAIANE---- 538

  Fly   194 TQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVL-IDEVESLAYARSA 257
                 ...:.:.|....|.:.||.||...|.::|:|..:  |.|    ||| .||::|:|..|..
plant   539 -----CQANFISIKGPELLTMWFGESEANVREIFDKARQ--SAP----CVLFFDELDSIATQRGN 592

  Fly   258 MSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFV--DRADIRLFIGYPGISAI 320
            ...:....|.||:|.:||::|.:.....|.|:..:|....||.|.:  .|.|..::|..|...:.
plant   593 SVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESR 657

  Fly   321 REIYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKL 370
            .:|:|..|.             :|..|::..|..||:.:.|.||..:.::
plant   658 YQIFKSCLR-------------KSPVAKDVDLRALAKYTQGFSGADITEI 694

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pch2	NP_524282.4	RecA-like_Pch2-like	115..312	CDD:410916	54/185 (29%)
AtCDC48B	NP_190891.1	CDC48	30..767	CDD:273521	67/245 (27%)