DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pch2 and AT3G19740

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_188608.4 Gene:AT3G19740 / 821511 AraportID:AT3G19740 Length:993 Species:Arabidopsis thaliana


Alignment Length:442 Identity:107/442 - (24%)
Similarity:165/442 - (37%) Gaps:127/442 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 GNDLRSNAIRNNVETALKAYFQTARKLPRNVSFLPD----------LTAEQTEHV------H--- 63
            |.|.|....|:|:...|||       |..|.....|          ||.::.|.|      |   
plant   580 GEDRRIVMSRSNLNELLKA-------LEENELLCTDLYQVNTDGVILTKQRAEKVIGWARNHYLS 637

  Fly    64 ----------SVLLERDNGGV----------------QPLK-VAETKFRFHFYATRPEEGQLGLF 101
                      .::|.|::..:                |.|| :|:.:|..:|.:.....|::|: 
plant   638 SCPSPSIKEGRLILPRESIEISVKRLKAQEDISRKPTQNLKNIAKDEFETNFVSAVVAPGEIGV- 701

  Fly   102 SGEEGSDGIDSIVAASHALLPAAQFVGLWENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACN 166
                   ..|.|.|..|                    :|:.|.:..:..:...|.....|::...
plant   702 -------KFDDIGALEH--------------------VKKTLNELVILPMRRPELFTRGNLLRPC 739

  Fly   167 RLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIA 231
            :.|||.||||||||.|.||||.:         |..:.:.|...:|.||||.::.||...||:..:
plant   740 KGILLFGPPGTGKTLLAKALATE---------AGANFISITGSTLTSKWFGDAEKLTKALFSFAS 795

  Fly   232 ELVSDPNNLVCVLIDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSL--KTCPNVLILATSNL 294
            :|..     |.:.:|||:||..||.....:|....||  |..:...|.|  |....:|||..:|.
plant   796 KLAP-----VIIFVDEVDSLLGARGGAFEHEATRRMR--NEFMAAWDGLRSKDSQRILILGATNR 853

  Fly   295 AQSIDLAFVDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEGL-LTQLAER 358
            ...:|.|.:.|...|:::..|......:|.|..|.              .|:.|.|. ..:||:.
plant   854 PFDLDDAVIRRLPRRIYVDLPDAENRLKILKIFLT--------------PENLETGFEFDKLAKE 904

  Fly   359 SVGLSGRTLRKLPLLAHAQYTSSTLFELDQK------------ISLSDFLDA 398
            :.|.||..|:.| .:|.|......|.:.:.|            :||.||:.:
plant   905 TEGYSGSDLKNL-CIAAAYRPVQELLQEENKDSVTNASPDLRPLSLDDFIQS 955

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 57/198 (29%)
AT3G19740NP_188608.4 tolA <266..>377 CDD:236545
CDC48 <582..981 CDD:273521 106/440 (24%)
P-loop containing Nucleoside Triphosphate Hydrolases 705..871 CDD:476819 58/201 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.