Protein Alignment pch2 and CDC48C

DIOPT Version :10

• Sequence 1: NP_524282.4
• Gene: pch2 / 41013
• FlyBaseID: FBgn0051453
• Length: 421
• Species: Drosophila melanogaster
• Sequence 2: NP_001326134.1
• Gene: CDC48C / 821105
• AraportID: AT3G01610
• Length: 830
• Species: Arabidopsis thaliana
• Alignment Length: 219
• Identity: 51/219 - (23%)
• Similarity: 88/219 - (40%)
• Gaps: 44/219 - (20%)

  Fly   169 ILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAEL 233
            ||.|||||.|||.|..|:|.:..:         ...:|::..:.|.....|.:.:.:||:|....
plant   270 ILFHGPPGCGKTKLANAIANEAGV---------PFYKISATEVISGVSGASEENIRELFSKAYRT 325

  Fly   234 VSDPNNLVCVLIDEVESLAYARSAMSSNEPRD-AMRVVNAVLTQLDSL-----KTCPN-----VL 287
            ...     .|.|||::::...|    .|:.|: ..|:|..:||.:|..     |..|:     ||
plant   326 APS-----IVFIDEIDAIGSKR----ENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVL 381

  Fly   288 ILATSNLAQSIDLAF--VDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEG 350
            ::..:|...::|.|.  ..|.:..:.:..|...|..||...:..:|...|...::
plant   382 VIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKK---------- 436

  Fly   351 LLTQLAERSVGLSGRTLRKLPLLA 374
               ::|..:.|..|..|..:..||
plant   437 ---RIARLTPGFVGADLESVAYLA 457

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pch2	NP_524282.4	RecA-like_Pch2-like	115..312	CDD:410916	39/155 (25%)
CDC48C	NP_001326134.1	CDC48	<223..808	CDD:273521	51/219 (23%)