Protein Alignment pch2 and CDC48B

DIOPT Version :10

• Sequence 1: NP_524282.4
• Gene: pch2 / 41013
• FlyBaseID: FBgn0051453
• Length: 421
• Species: Drosophila melanogaster
• Sequence 2: NP_178463.1
• Gene: CDC48B / 814895
• AraportID: AT2G03670
• Length: 603
• Species: Arabidopsis thaliana
• Alignment Length: 277
• Identity: 76/277 - (27%)
• Similarity: 120/277 - (43%)
• Gaps: 45/277 - (16%)

  Fly   111 DSIVAASHALLPAAQFVG--------------LWENLIYETGLKEKLLKFALSALMFSEHRVDTN 161
            ||::..|.....|...||              .|:::.....||:||.:.....:..|...|...
plant   252 DSLILTSQDFKIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMG 316

  Fly   162 VIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQL 226
             |:..|.||||||||..||:|.||.|.    ..|.|:     ..::...|||.:..|...|:...
plant   317 -ISPMRGILLHGPPGCSKTTLAKAAAN----AAQASF-----FSLSCAELFSMYVGEGEALLRNT 371

  Fly   227 FNKIAELVSDPNNLVCVLIDEVESLAYAR-SAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILA 290
            |.: |.|.| |:   .:..||.:.:|..| ...|||......|:::.:||::|.|:....:|:||
plant   372 FQR-ARLAS-PS---IIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLA 431

  Fly   291 TSNLAQSIDLAFV--DRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEGLLT 353
            .:|...:||.|.:  .|.|:.|::..|.:.|..||.:          |..|.:...:|.:   |.
plant   432 ATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQ----------VHTRNMTLGDDVD---LR 483

  Fly   354 QLAERSVGLSGRTLRKL 370
            ::||.:...:|..|..|
plant   484 KIAEETDLFTGAELEGL 500

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pch2	NP_524282.4	RecA-like_Pch2-like	115..312	CDD:410916	61/213 (29%)
CDC48B	NP_178463.1	CDC48	<23..551	CDD:273521	76/277 (27%)