DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and AFG2B

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_076968.2 Gene:AFG2B / 79029 HGNCID:28762 Length:753 Species:Homo sapiens


Alignment Length:359 Identity:93/359 - (25%)
Similarity:146/359 - (40%) Gaps:83/359 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 EEGQLGLFSGEEGSDG--IDSI--VAASHALLPAA--QFVGL-------WENLIYETGLKEKLLK 145
            |.....|...|:..|.  ||.|  :.|...:.|::  ..:||       ||.:   .||::..||
Human   414 EAAMHALLHSEKNQDNPVIDEIDFLEAFKNIQPSSFRSVIGLMDIKPVDWEEI---GGLEDVKLK 475

  Fly   146 FALS---ALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEIN 207
            ...|   .|.|....|... :...:.:||:||||..||:|.:|||         :..:...|.::
Human   476 LKQSIEWPLKFPWEFVRMG-LTQPKGVLLYGPPGCAKTTLVRALA---------TSCHCSFVSVS 530

  Fly   208 SHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYARSAMSSNEPRDAM-RVVN 271
            ...|||.:..:|.|:::|:|.:..  .|.|   ..:.:||::|:..||||  |....|.. ||::
Human   531 GADLFSPFVGDSEKVLSQIFRQAR--ASTP---AILFLDEIDSILGARSA--SKTGCDVQERVLS 588

  Fly   272 AVLTQLD--SLKTCP-----------------NVLILATSNLAQSIDLAFV--DRADIRLFIGYP 315
            .:|.:||  .|||..                 :|:|:|.:|....:|.|.:  .|.|..::|..|
Human   589 VLLNELDGVGLKTIERRGSKSSQQEFQEVFNRSVMIIAATNRPDVLDTALLRPGRLDKIIYIPPP 653

  Fly   316 GISAIREIYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKLPLLAHAQYTS 380
            .       :||.|:.|.   |..:.:....|..   |..||..:...||..||.|       .|.
Human   654 D-------HKGRLSILK---VCTKTMPIGPDVS---LENLAAETCFFSGADLRNL-------CTE 698

  Fly   381 STLFELDQKISLSDFLDAMLEALEQHLGEQRLLK 414
            :.|..|.:     :.|||.....|..|...:.:|
Human   699 AALLALQE-----NGLDATTVKQEHFLKSLKTVK 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 61/230 (27%)
AFG2BNP_076968.2 Required for interaction with AFG2A and CINP. /evidence=ECO:0000269|PubMed:38554706 1..189
CDC48 22..746 CDD:273521 93/359 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 171..203
Blue background indicates that the domain is not in the aligned region.

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