DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and Trip13

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_081458.1 Gene:Trip13 / 69716 MGIID:1916966 Length:432 Species:Mus musculus


Alignment Length:436 Identity:187/436 - (42%)
Similarity:261/436 - (59%) Gaps:48/436 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LSNSDTVHVEVCLRG------NDLRSNAIR--NNVETALKAYFQTARK---LPRNVSFLPDLTAE 57
            ::.|..|||||..|.      .|::|:..|  |........|..|...   |.|||        :
Mouse    15 VAESPAVHVEVLQRSGSTAKKEDIKSSVYRLLNRHNIVFGDYVWTEFDDPFLSRNV--------Q 71

  Fly    58 QTEHVHSVLLERDNGGVQPLKVAETKFRFHFYATRPEEGQLGLFSGEEGSDGIDSIVAASHALLP 122
            ....|.:.|..:|   .||:.::......|.:... |||.    |.|...:..::|:||||.:||
Mouse    72 SVSIVDTELKAKD---PQPIDLSACTIALHIFQLN-EEGP----SSENLDEETENIIAASHWVLP 128

  Fly   123 AAQFVGLWENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALA 187
            ||:|.|||::|:|:..:|..||.:.::.::||:..||:|:|..||::||||||||||||||||||
Mouse   129 AAEFHGLWDSLVYDVEVKSHLLDYVMTTVLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALA 193

  Fly   188 QKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLA 252
            |||:||....|.|..|:|||||||||||||||||||.::|.||.:|:.|...||.|||||||||.
Mouse   194 QKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESLT 258

  Fly   253 YARSAMSSN-EPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFVDRADIRLFIGYPG 316
            .||:|..:. ||.||:|||||||||:|.:|...||:||.|||:.:.||:||||||||:.:||.|.
Mouse   259 AARNACRAGAEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFVDRADIKQYIGPPS 323

  Fly   317 ISAIREIYKGMLAELMSAGVL--QREVLESEDAE------------EGLLTQLAERSVGLSGRTL 367
            .:||.:||...|.|||...::  ::::|...:.|            ..||::::.:|.|||||.|
Mouse   324 AAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGFIENNVSKLSLLLSEISRKSEGLSGRVL 388

  Fly   368 RKLPLLAHAQYTSSTLFELDQKISLSDFLDAMLEALEQHLGEQRLL 413
            ||||.||||.|..:      ..:::..||.|:..|:::...|::.|
Mouse   389 RKLPFLAHALYIQA------PSVTIEGFLQALSLAVDKQFEEKKKL 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 121/197 (61%)
Trip13NP_081458.1 McrB 34..>205 CDD:441011 70/186 (38%)
RecA-like_Pch2-like 121..319 CDD:410916 121/197 (61%)

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