DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and Spata5

DIOPT Version :9

Sequence 1:NP_001287235.1 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001156983.1 Gene:Spata5 / 57815 MGIID:1927170 Length:893 Species:Mus musculus


Alignment Length:247 Identity:68/247 - (27%)
Similarity:114/247 - (46%) Gaps:34/247 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 IACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLF 227
            |...|.:||:||||||||.:.:|:|.::     |:|...    ||...:.||::.|:...:.|:|
Mouse   384 IPAPRGLLLYGPPGTGKTMIARAVANEV-----GAYVSV----INGPEIISKFYGETEARLRQIF 439

  Fly   228 NKIAELVSDPNNLVCVLIDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPN---VLIL 289
            .:..  :..|:   .:.|||:::|...|....|...:   |||.::||.:|.:.:..:   ||:|
Mouse   440 AEAT--LRHPS---IIFIDELDALCPKREGAQSEVEK---RVVASLLTLMDGIGSEGSEGRVLVL 496

  Fly   290 ATSNLAQSIDLAF--VDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEG-- 350
            ..:|..|::|.|.  ..|.|..:.||.|......:|.:.:|..:... :.:.|:|...:...|  
Mouse   497 GATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHL-LTKAELLRLANNAHGYV 560

  Fly   351 ---LLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQKISLSDFLDAM 399
               |.....|..:....|.|||.|.|..::.....      ||:|:|||..|
Mouse   561 GADLKALCNEAGLHALRRVLRKQPNLPDSKVAGMV------KITLNDFLQGM 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_001287235.1 AAA 166..315 CDD:214640 46/153 (30%)
AAA 169..314 CDD:278434 44/149 (30%)
Spata5NP_001156983.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..38
CDC48_N 64..132 CDD:304500
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 202..227
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..315
SpoVK 370..882 CDD:223540 68/247 (28%)
AAA 390..522 CDD:278434 43/148 (29%)
AAA 664..796 CDD:278434
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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