DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and Afg2a

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001156983.1 Gene:Afg2a / 57815 MGIID:1927170 Length:893 Species:Mus musculus


Alignment Length:247 Identity:68/247 - (27%)
Similarity:114/247 - (46%) Gaps:34/247 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 IACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLF 227
            |...|.:||:||||||||.:.:|:|.::     |:|...    ||...:.||::.|:...:.|:|
Mouse   384 IPAPRGLLLYGPPGTGKTMIARAVANEV-----GAYVSV----INGPEIISKFYGETEARLRQIF 439

  Fly   228 NKIAELVSDPNNLVCVLIDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPN---VLIL 289
            .:..  :..|:   .:.|||:::|...|....|...:   |||.::||.:|.:.:..:   ||:|
Mouse   440 AEAT--LRHPS---IIFIDELDALCPKREGAQSEVEK---RVVASLLTLMDGIGSEGSEGRVLVL 496

  Fly   290 ATSNLAQSIDLAF--VDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEG-- 350
            ..:|..|::|.|.  ..|.|..:.||.|......:|.:.:|..:... :.:.|:|...:...|  
Mouse   497 GATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHL-LTKAELLRLANNAHGYV 560

  Fly   351 ---LLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQKISLSDFLDAM 399
               |.....|..:....|.|||.|.|..::.....      ||:|:|||..|
Mouse   561 GADLKALCNEAGLHALRRVLRKQPNLPDSKVAGMV------KITLNDFLQGM 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 45/153 (29%)
Afg2aNP_001156983.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..38
CDC48_N 64..132 CDD:451359
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 202..227
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..315
CDC48 <323..889 CDD:273521 68/247 (28%)
Blue background indicates that the domain is not in the aligned region.

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