DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and fignl2

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001201837.1 Gene:fignl2 / 561837 ZFINID:ZDB-GENE-090313-189 Length:684 Species:Danio rerio


Alignment Length:399 Identity:93/399 - (23%)
Similarity:146/399 - (36%) Gaps:105/399 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 FQTARKLPRNVSFLPDLTAEQTEHVHSVLLERDN----GGVQPLKVAETKFRFHFYATRPEEGQL 98
            |.|....|:  .|.|...:.|:.      ||.|.    .|::||             ..|..|..
Zfish   328 FGTGSTDPQ--GFKPSKPSSQSS------LEGDEVGKYSGLKPL-------------VSPTYGAA 371

  Fly    99 GLFS------GEEG--------------SDGIDSIVAASHALL--------PAAQFVGLWENLIY 135
            |.:|      ||.|              ||.:.||......|:        ||..:..|..|...
Zfish   372 GDYSPPAAMTGENGGAEQGFSQNRSQKRSDPMKSIEPRMLELVSRELQDCSPAMLWTELAGNCHI 436

  Fly   136 ETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAY 200
            :..|:|.||...|.         ....|...:.|||.||.|.|||:|.::|:.::     |:..|
Zfish   437 KAALEEDLLWPVLR---------PNPAIHPPKTILLFGPQGGGKTTLARSLSSQI-----GASFY 487

  Fly   201 THLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYARSAMSSNEPRD 265
                .::..:|.||...|:.:|:..||:     |:.......||:.|||::          |...
Zfish   488 ----RLSCATLASKLKGEAEQLLLTLFS-----VATARQPAMVLLSEVEAI----------EEEG 533

  Fly   266 AMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFVDRADIRLFIGYPGISAIREIYKGMLAE 330
            ..:.:.|.|.::...:: ...|::.|:.....|..:.:.....|..||.|..:..|.:....||.
Zfish   534 LRQQLQAQLEKIQHNQS-NQFLVVCTTRRPDLIKDSLLRCFSKRYHIGLPDGNTRRHVLLQALAP 597

  Fly   331 LMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKL--PLLAHAQYTSST-LFELDQKIS- 391
             ....:.:||           |:.:.:||.|.|...|.:|  ..||.|..::|. |..|...:| 
Zfish   598 -QGCSLSERE-----------LSAVLQRSEGFSVWELLQLCQQALASASASASVPLHSLPASLSS 650

  Fly   392 --LSDFLDA 398
              |.||.:|
Zfish   651 PTLQDFENA 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 44/204 (22%)
fignl2NP_001201837.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 27..48
PHA03247 <86..287 CDD:223021
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 99..179
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 292..403 21/95 (22%)
P-loop containing Nucleoside Triphosphate Hydrolases 429..579 CDD:476819 41/183 (22%)
Blue background indicates that the domain is not in the aligned region.

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