DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and zgc:153738

DIOPT Version :9

Sequence 1:NP_001287235.1 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001073437.3 Gene:zgc:153738 / 558115 ZFINID:ZDB-GENE-061013-622 Length:818 Species:Danio rerio


Alignment Length:468 Identity:86/468 - (18%)
Similarity:168/468 - (35%) Gaps:164/468 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VHVEVCLRGNDLRSNAIRN-----------NVETALKAYFQTARKLPRNVSFLPDLTAEQ-TEHV 62
            :.||:..:.::|....:.|           .|:.|.|.  :.|.|..:......||||:: ||.:
Zfish   424 IEVEIRKQVDELMRQELANWKLAVDKEKSGKVKGAAKK--KKASKSAKRKKKDKDLTADRTTESL 486

  Fly    63 HSVLLERDNGGVQPLKVAETKFRFHFYATRPEEGQLGLFSGE-------------EGSDGIDSI- 113
            ...|:|::                  ...:||..:|..:.|:             |....:..: 
Zfish   487 FEELVEQE------------------LLKKPENVKLKDYLGDYSYLGTTLRQSDIEPMPSLSDVR 533

  Fly   114 -VAASHALLPAAQFVGLWENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGT 177
             |.|.:|:||      |....::|   |..|:|                      .|||.||.|.
Zfish   534 QVVALYAILP------LGSQAVHE---KSPLVK----------------------TILLVGPSGV 567

  Fly   178 GKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESG-KLVAQLFNKIAELVSDPNNLV 241
            ||..|..|:.|:..         .:|.:::..::..|:...:| :::..|..|:|.|: .|:   
Zfish   568 GKKMLVHAICQETG---------ANLFDLSPLNVAKKYPGRNGLQMMLHLVFKVARLM-QPS--- 619

  Fly   242 CVLIDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFVDRA 306
            .:.|.:.|.:.| |......:..|..|:...:...|.|::....|||:.|::...|.||      
Zfish   620 VIWIGDAEKMFY-RKVPKEEKELDPKRLKKDLPKILKSIRGEDCVLIVGTTSDPHSADL------ 677

  Fly   307 DIRLFIGYPGISAIREIYKGML----AELMSAGVLQREVLESEDAE------------------E 349
                       .::.:.|..::    .:..|..|:.:|:::....|                  :
Zfish   678 -----------KSLCKFYNKIILIPRPDYASRYVMWKELIKKNGGEVTGDLDLSSLAKISDGYTQ 731

  Fly   350 GLLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQKISLSDFLDAML----------EALE 404
            |.:.|:. ||: |:.|.:::.|               .:.::.|:|:..:.          |||:
Zfish   732 GHMVQVV-RSI-LTERRIQQFP---------------KRPLTASEFVSPLARIDPVFQEEEEALK 779

  Fly   405 Q-----HLGEQRL 412
            .     .||::|:
Zfish   780 NWYAKTPLGKKRI 792

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_001287235.1 AAA 166..315 CDD:214640 34/149 (23%)
AAA 169..314 CDD:278434 34/145 (23%)
zgc:153738NP_001073437.3 SpoVK <557..769 CDD:223540 49/281 (17%)
AAA 559..692 CDD:278434 35/163 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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