DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and fign

DIOPT Version :9

Sequence 1:NP_001287235.1 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_021334341.1 Gene:fign / 553599 ZFINID:ZDB-GENE-050522-339 Length:747 Species:Danio rerio


Alignment Length:400 Identity:91/400 - (22%)
Similarity:155/400 - (38%) Gaps:120/400 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 RSNAIRNNVETALKAYFQTARKLPRNVSFLPDLTAEQTEHVHSVLLERDNGGVQPLKVAETKFRF 86
            |.|....|.:|:..|:..|.:.:|         |.:|.:     ...:....:.|.....:|   
Zfish   354 RGNGFDRNADTSSLAFKPTKQSMP---------TDQQRK-----FGSQAGRALTPPSYGSSK--- 401

  Fly    87 HFYATRPEEGQLG-LFSGE------------EGSD-------GIDSIVAASHALLPA-------- 123
                     |.|| :.|||            .|.|       .|.:..::||   ||        
Zfish   402 ---------GSLGSMRSGESFGKFGSPVMSDHGDDSRQHLPHSIGTATSSSH---PAEEQLKNSD 454

  Fly   124 AQFVGL-------------WENL----IYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILL 171
            |..|.:             |.::    :.:..:|:::|...|...|||      .:....|.|||
Zfish   455 ASLVEMVTTEILQQTPPVDWSDIAGLEMAKATIKDEVLWPILRPDMFS------GLATLPRSILL 513

  Fly   172 HGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSD 236
            .||.|||:|.|.:.:|.:|.         ...:.::..:|.:||..|..|:|...|     |::.
Zfish   514 FGPQGTGRTLLGRCMASQLG---------AAFLLLSGSALVTKWLGEGEKIVQASF-----LIAR 564

  Fly   237 PNNLVCVLIDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCP--NVLILATSNLAQSID 299
            ......|.|.:|:.|  ..|.:|...|  ..|:.:.:|.|||.:.:.|  :||::.:::..:.||
Zfish   565 CRQPSVVFISDVDLL--LSSQLSEESP--VNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEID 625

  Fly   300 LA----FVDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSV 360
            .:    ||.    ||.:..|..:|..:|    :::|:|    |.....| |.|   :|.|.:|:.
Zfish   626 ESLRRYFVK----RLLVPLPDATARHQI----ISQLLS----QHNYCLS-DKE---VTLLVQRTD 674

  Fly   361 GLSGRTLRKL 370
            |.||..:.:|
Zfish   675 GFSGLDVVRL 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_001287235.1 AAA 166..315 CDD:214640 42/154 (27%)
AAA 169..314 CDD:278434 41/150 (27%)
fignXP_021334341.1 EBV-NA3 <174..300 CDD:332796
Herpes_UL32 <270..>444 CDD:283680 20/115 (17%)
SpoVK <464..734 CDD:223540 64/260 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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