DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and fign

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_021334341.1 Gene:fign / 553599 ZFINID:ZDB-GENE-050522-339 Length:747 Species:Danio rerio


Alignment Length:400 Identity:91/400 - (22%)
Similarity:155/400 - (38%) Gaps:120/400 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 RSNAIRNNVETALKAYFQTARKLPRNVSFLPDLTAEQTEHVHSVLLERDNGGVQPLKVAETKFRF 86
            |.|....|.:|:..|:..|.:.:|         |.:|.:     ...:....:.|.....:|   
Zfish   354 RGNGFDRNADTSSLAFKPTKQSMP---------TDQQRK-----FGSQAGRALTPPSYGSSK--- 401

  Fly    87 HFYATRPEEGQLG-LFSGE------------EGSD-------GIDSIVAASHALLPA-------- 123
                     |.|| :.|||            .|.|       .|.:..::||   ||        
Zfish   402 ---------GSLGSMRSGESFGKFGSPVMSDHGDDSRQHLPHSIGTATSSSH---PAEEQLKNSD 454

  Fly   124 AQFVGL-------------WENL----IYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILL 171
            |..|.:             |.::    :.:..:|:::|...|...|||      .:....|.|||
Zfish   455 ASLVEMVTTEILQQTPPVDWSDIAGLEMAKATIKDEVLWPILRPDMFS------GLATLPRSILL 513

  Fly   172 HGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSD 236
            .||.|||:|.|.:.:|.:|.         ...:.::..:|.:||..|..|:|...|     |::.
Zfish   514 FGPQGTGRTLLGRCMASQLG---------AAFLLLSGSALVTKWLGEGEKIVQASF-----LIAR 564

  Fly   237 PNNLVCVLIDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCP--NVLILATSNLAQSID 299
            ......|.|.:|:.|  ..|.:|...|  ..|:.:.:|.|||.:.:.|  :||::.:::..:.||
Zfish   565 CRQPSVVFISDVDLL--LSSQLSEESP--VNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEID 625

  Fly   300 LA----FVDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSV 360
            .:    ||.    ||.:..|..:|..:|    :::|:|    |.....| |.|   :|.|.:|:.
Zfish   626 ESLRRYFVK----RLLVPLPDATARHQI----ISQLLS----QHNYCLS-DKE---VTLLVQRTD 674

  Fly   361 GLSGRTLRKL 370
            |.||..:.:|
Zfish   675 GFSGLDVVRL 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 55/227 (24%)
fignXP_021334341.1 PHA03378 <174..300 CDD:223065
RecA-like_fidgetin 476..638 CDD:410931 48/189 (25%)
AAA_lid_3 669..>694 CDD:465537 5/15 (33%)
Vps4_C <711..744 CDD:462762
Blue background indicates that the domain is not in the aligned region.

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