DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and iqca1

DIOPT Version :9

Sequence 1:NP_001287235.1 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_009300551.1 Gene:iqca1 / 553364 ZFINID:ZDB-GENE-050208-768 Length:845 Species:Danio rerio


Alignment Length:480 Identity:95/480 - (19%)
Similarity:182/480 - (37%) Gaps:140/480 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SFLSNSDT----------VHVEVCLRGNDLRSNAIRN--------------NVETALKAYFQTAR 42
            :||...|.          |.||:.::.::|....::|              .|:.:.|...:..|
Zfish   417 NFLQRFDAQLVREEKRLEVEVELRVQVDELMRQELKNLKLVVDRDKGKKKKKVKKSSKKKKKKGR 481

  Fly    43 KL-PRNVSFLPDLTAEQTEHVHSVLLERDNGG--VQPLKVAETKF--RFHFYATRPEEGQLGLFS 102
            |. .:......||||::|  :.|:..|....|  ::|:.|..:.:  .:.:..|...:..:    
Zfish   482 KTGKKKKKKEKDLTADRT--IESLYEELVLEGIIIRPMNVKLSDYIGEYSYLGTTLRQADI---- 540

  Fly   103 GEEGSDGIDSI--VAASHALLPAAQFVGLWENLIYETGLKEKLLKFALSALMFSEHRVDTNVIAC 165
              |....:..:  :.|.:.:||      |....::|.|   .|:                     
Zfish   541 --EPMPSLSDVRQLIALYGILP------LGSQCVHERG---PLI--------------------- 573

  Fly   166 NRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESG-KLVAQLFNK 229
             |.:||.||.|.||..|..||..:..         .:|..::..:|..|:..:|| :|:..:..|
Zfish   574 -RALLLTGPQGVGKKMLVHALCTETG---------ANLFNLSPSTLAGKYPGKSGLQLLLHMVFK 628

  Fly   230 IAELVSDPNNLVCVLIDEVESLAYAR--SAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATS 292
            :|..: .|:   .:.|.:.|...|.:  ......||:...:.:..:   |.|:|....||::.||
Zfish   629 VARQL-QPS---VIWIGDAEKTFYKKVPKLEKEMEPKRLKKTLPKI---LKSIKAEDRVLVVGTS 686

  Fly   293 NLAQSIDLAFVDRADIRLFIGYPGISAIREIYKGML----AELMSAGVLQREVLESEDA--EEGL 351
            .  :..|      |||:.|.         ::||.::    .:..|...|.:|:|::..|  :..|
Zfish   687 R--RPFD------ADIKPFC---------KVYKKIILIPRPDYASRFTLWKELLQAHGALLDPKL 734

  Fly   352 -LTQLAERSVGLS-GRTLRKLP--LLAHAQYTSSTLFELDQKISLS--DFL------DAMLEALE 404
             |:.||:.:.|.: |..|:.:.  |:.|.       .||..|..|:  :|:      |.:.:..|
Zfish   735 DLSSLAKVTDGYTQGHILQAIQTILIPHR-------LELQAKRPLTAVEFIPPLARQDPVYKEEE 792

  Fly   405 QH---------LGEQRLLKLESMEQ 420
            :.         ||::|....::.|:
Zfish   793 ESFKAWYSRTPLGKKRARAAKASEE 817

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_001287235.1 AAA 166..315 CDD:214640 37/151 (25%)
AAA 169..314 CDD:278434 36/147 (24%)
iqca1XP_009300551.1 SpoVK <576..748 CDD:223540 48/204 (24%)
AAA 576..691 CDD:278434 31/132 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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