DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and Pex1

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_652016.1 Gene:Pex1 / 45460 FlyBaseID:FBgn0013563 Length:1006 Species:Drosophila melanogaster


Alignment Length:486 Identity:108/486 - (22%)
Similarity:180/486 - (37%) Gaps:170/486 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SDTVH--VEVCLRGNDLRSNAIRNNVETALKA--------YFQTARKLP------RNVSFLPDLT 55
            :|||:  :......|.:...|..|.::|..|.        .|||..:||      |.:     :.
  Fly   572 ADTVYQLIVQYTTNNAIAVIATVNELQTLNKRLSSPRGRHVFQTVARLPNLERADREI-----IL 631

  Fly    56 AEQTEHVHSV----LLERDN--GGVQPLKVAETKFRFHFYATRPEEGQ----------------- 97
            .|...|::..    |::..|  .|.:...:.:...|..|||.|..:.|                 
  Fly   632 RELCSHINVAKDLDLVKFSNLTEGYRKCDLVQFVERAIFYAYRISKTQPLLTNDQLIESLEHTNS 696

  Fly    98 ---LGLFSGEE-GSD------------GIDSIVAASHALLPAAQFVGLWENLIYETGLKEKLLKF 146
               .|:.|.:. |:|            |::|:|.....:|       :|.:. |.|......|: 
  Fly   697 YCLQGIQSNQRTGNDADANEMRVEELPGLESVVGVLEEVL-------MWPSR-YPTIFNASPLR- 752

  Fly   147 ALSALMFSEHRVDTNVIACNRL-ILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHS 210
                               |:. :||:||||||||.|...||...::|         ::.:....
  Fly   753 -------------------NQAGVLLYGPPGTGKTYLVSQLATSWNLR---------IISVKGPE 789

  Fly   211 LFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVL-IDEVESLAYARSAMSSNEPRDAMRVVNAVL 274
            |.:|:..:|.:.|..|||:...  :.|    ||| .||.:|||..|...|:..   ..||||.:|
  Fly   790 LLAKYIGQSEENVRNLFNRARS--ARP----CVLFFDEFDSLAPKRGHDSTGV---TDRVVNQLL 845

  Fly   275 TQLDSLKTCPNVLILATSNLAQSIDLAF-----VDR----------ADIRLFIGYPGISAIREIY 324
            |:||.::....|.::|.::..:.:|.|.     :||          |.:|:|             
  Fly   846 TELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVRIF------------- 897

  Fly   325 KGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQK 389
                 |.:|:.:...|.::.:               ..:|:|         |.||.:.:    |.
  Fly   898 -----EALSSTLSLDECVDFD---------------WFAGKT---------ANYTGADI----QS 929

  Fly   390 ISLSDFLDAMLEALEQHLGEQRLLKLESMEQ 420
            |..|..:.|:.|||.| .|.::|.|..|::|
  Fly   930 ILTSANMAAVKEALAQ-FGHEKLAKKISLKQ 959

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 54/213 (25%)
Pex1NP_652016.1 PEX-1N 93..168 CDD:462729
CDC48 365..983 CDD:273521 108/486 (22%)
RecA-like_PEX1_r2 728..885 CDD:410934 53/202 (26%)
Blue background indicates that the domain is not in the aligned region.

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