DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pch2 and Pex1

DIOPT Version :9

Sequence 1:NP_001287235.1 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_652016.1 Gene:Pex1 / 45460 FlyBaseID:FBgn0013563 Length:1006 Species:Drosophila melanogaster


Alignment Length:486 Identity:108/486 - (22%)
Similarity:180/486 - (37%) Gaps:170/486 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SDTVH--VEVCLRGNDLRSNAIRNNVETALKA--------YFQTARKLP------RNVSFLPDLT 55
            :|||:  :......|.:...|..|.::|..|.        .|||..:||      |.:     :.
  Fly   572 ADTVYQLIVQYTTNNAIAVIATVNELQTLNKRLSSPRGRHVFQTVARLPNLERADREI-----IL 631

  Fly    56 AEQTEHVHSV----LLERDN--GGVQPLKVAETKFRFHFYATRPEEGQ----------------- 97
            .|...|::..    |::..|  .|.:...:.:...|..|||.|..:.|                 
  Fly   632 RELCSHINVAKDLDLVKFSNLTEGYRKCDLVQFVERAIFYAYRISKTQPLLTNDQLIESLEHTNS 696

  Fly    98 ---LGLFSGEE-GSD------------GIDSIVAASHALLPAAQFVGLWENLIYETGLKEKLLKF 146
               .|:.|.:. |:|            |::|:|.....:|       :|.:. |.|......|: 
  Fly   697 YCLQGIQSNQRTGNDADANEMRVEELPGLESVVGVLEEVL-------MWPSR-YPTIFNASPLR- 752

  Fly   147 ALSALMFSEHRVDTNVIACNRL-ILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHS 210
                               |:. :||:||||||||.|...||...::|         ::.:....
  Fly   753 -------------------NQAGVLLYGPPGTGKTYLVSQLATSWNLR---------IISVKGPE 789

  Fly   211 LFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVL-IDEVESLAYARSAMSSNEPRDAMRVVNAVL 274
            |.:|:..:|.:.|..|||:...  :.|    ||| .||.:|||..|...|:..   ..||||.:|
  Fly   790 LLAKYIGQSEENVRNLFNRARS--ARP----CVLFFDEFDSLAPKRGHDSTGV---TDRVVNQLL 845

  Fly   275 TQLDSLKTCPNVLILATSNLAQSIDLAF-----VDR----------ADIRLFIGYPGISAIREIY 324
            |:||.::....|.::|.::..:.:|.|.     :||          |.:|:|             
  Fly   846 TELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVRIF------------- 897

  Fly   325 KGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQK 389
                 |.:|:.:...|.::.:               ..:|:|         |.||.:.:    |.
  Fly   898 -----EALSSTLSLDECVDFD---------------WFAGKT---------ANYTGADI----QS 929

  Fly   390 ISLSDFLDAMLEALEQHLGEQRLLKLESMEQ 420
            |..|..:.|:.|||.| .|.::|.|..|::|
  Fly   930 ILTSANMAAVKEALAQ-FGHEKLAKKISLKQ 959

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_001287235.1 AAA 166..315 CDD:214640 50/165 (30%)
AAA 169..314 CDD:278434 49/160 (31%)
Pex1NP_652016.1 PEX-1N 93..168 CDD:286361
SpoVK 479..974 CDD:223540 108/486 (22%)
P-loop_NTPase 480..604 CDD:304359 8/31 (26%)
AAA 757..887 CDD:278434 46/147 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.