DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and LOC4397685

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_001230510.2 Gene:LOC4397685 / 4397685 VectorBaseID:AGAMI1_013526 Length:826 Species:Anopheles gambiae


Alignment Length:418 Identity:98/418 - (23%)
Similarity:162/418 - (38%) Gaps:122/418 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FLSNSDTVHVEVCLRGNDLRSNAIR-----NNVETALK--AYFQTARKLPRNVSFLPDLTAEQTE 60
            ||:..|::|..|  |||  |:..|.     :||...|:  .......:||     :||..|    
Mosquito   431 FLTLLDSLHANV--RGN--RTVVIGTTDSVDNVNPLLRRGGRMDYEFELP-----VPDAIA---- 482

  Fly    61 HVHSVLLER--DNGGVQPLKVAETKFRFHFYATRPEE---GQLGLFSGEEGSDGIDSIV--AASH 118
              .:.:|||  ...|                .|.|||   ....:..|..|:| ::::|  |||.
Mosquito   483 --RAAILERVLSRHG----------------QTVPEEDIRAVARITHGYVGAD-LENLVSKAASS 528

  Fly   119 ----------ALLPAAQFVG--------------LWENLIYETGLKEKLLKFALSALMFSEHRVD 159
                      ||:.|.|.|.              .|.::..:..||.||.:.           :|
Mosquito   529 APTGKPIDGPALMAALQHVKPSAMREIMIECPNVRWTDIGGQDELKLKLRQI-----------ID 582

  Fly   160 TNV----------IACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSK 214
            ..:          |...|.:|:.||||..||.:.||:|.:..:         :.:.|....|||.
Mosquito   583 WPIHHPELFERLGIKPPRGLLMFGPPGCSKTMIAKAIATESRL---------NFLSIKGSELFSM 638

  Fly   215 WFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDS 279
            |..||.:.|..||.:..::...     .:..||::::...|||.|.:..::  ||:..:||::|.
Mosquito   639 WVGESERAVRDLFRRARQVAPS-----IIFFDEIDAIGGERSAESGSSVKE--RVLAQLLTEMDG 696

  Fly   280 LKTCPNVLILATSNLAQSIDLAFV--DRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVL 342
            :....:|.|:|.:|....||.|.:  .|.|..:::..|..:|..||:...|..:.:|..:.    
Mosquito   697 VSGLKDVRIVAATNRPDLIDRALMRPGRLDRIVYVRLPDAAAREEIFHIKLKTIPTASTVD---- 757

  Fly   343 ESEDAEEGLLTQLAERSVGLSGRTLRKL 370
                     |.:|..|:.|.||..:..:
Mosquito   758 ---------LAELVRRTAGCSGSEIEAI 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 56/232 (24%)
LOC4397685XP_001230510.2 None

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