DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and spas

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster


Alignment Length:425 Identity:102/425 - (24%)
Similarity:161/425 - (37%) Gaps:117/425 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 AIRNNVETALKAYFQTARKLPRNVSFLPDLTAEQTEHVHSVLLERDNGGVQPLKVAET--KFRFH 87
            |:.|..:|           ||||:.....:.|.|.               ||.|.|.|  ..|..
  Fly   387 AVANKSQT-----------LPRNLGSKTSVGAVQR---------------QPAKTAATPPAVRRQ 425

  Fly    88 FYA---TRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAAQFVGLWENL-------IYETGLK-- 140
            |.:   |.|:..:..:  ...|..|       |.|..|.....|:.:.|       |.|.|.|  
  Fly   426 FSSGRNTPPQRSRTPI--NNNGPSG-------SGASTPVVSVKGVEQKLVQLILDEIVEGGAKVE 481

  Fly   141 ------EKLLKFALSALMF---SEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQG 196
                  :.:.|.||..::.   ....:.|.:.|..:.:||.||||.|||.|.:|:|.:.|     
  Fly   482 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS----- 541

  Fly   197 SYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYARSAMSSN 261
                ...:.|::.||.||:..:..|||..||.....:  .|:   .:.||||:||.   |..||:
  Fly   542 ----ATFLNISAASLTSKYVGDGEKLVRALFAVARHM--QPS---IIFIDEVDSLL---SERSSS 594

  Fly   262 EPRDAMRVVNAVLTQLDSLKTCPN---VLILATSNLAQSIDLAFVDRADIRLFIGYPGISAIREI 323
            |...:.|:....|.:.|.|...|:   :::||.:|..|.:|.|.:.|...|:::..|        
  Fly   595 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLP-------- 651

  Fly   324 YKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVG-LSGRTLRKLPLLAHAQYTSSTLFELD 387
                                .|...|.||.:|.::... |....||:|..:... |:.|.|..|.
  Fly   652 --------------------DEQTRELLLNRLLQKQGSPLDTEALRRLAKITDG-YSGSDLTALA 695

  Fly   388 QKISLSDFLDAMLEAL-EQHLGEQRLLKLESMEQL 421
            :        ||.||.: |.::.:.:.|.:.:|..:
  Fly   696 K--------DAALEPIRELNVEQVKCLDISAMRAI 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 61/217 (28%)
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
RecA-like_spastin 484..648 CDD:410932 52/180 (29%)
AAA_lid_3 676..727 CDD:465537 14/56 (25%)
Vps4_C <722..754 CDD:462762 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.

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