Protein Alignment pch2 and Nsf2

DIOPT Version :10

• Sequence 1: NP_524282.4
• Gene: pch2 / 41013
• FlyBaseID: FBgn0051453
• Length: 421
• Species: Drosophila melanogaster
• Sequence 2: NP_788676.1
• Gene: Nsf2 / 41694
• FlyBaseID: FBgn0266464
• Length: 752
• Species: Drosophila melanogaster
• Alignment Length: 301
• Identity: 71/301 - (23%)
• Similarity: 133/301 - (44%)
• Gaps: 50/301 - (16%)

  Fly   143 LLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEIN 207
            :.:.|.::.:|....|:...|...:.|||:||||||||.:.:.:...|:.|....        :|
  Fly   235 IFRRAFASRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKI--------VN 291

  Fly   208 SHSLFSKWFSESGKLVAQLFNKIAELVS--DPNN-LVCVLIDEVESLAYARSAMSSNE-PRDAMR 268
            ...:..|:..||...:.:||.:..|...  .||: |..::.||::::..||.:::.|. ..|.
  Fly   292 GPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSVAGNSGVHDT-- 354

  Fly   269 VVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFV--DRADIRLFIGYP---GISAIREIYKGML 328
            |||.:|.::|.::...|:|::..:|....||.|.:  .|.::::.|..|   |...|..|:...:
  Fly   355 VVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRM 419

  Fly   329 AELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKLPLLAHAQYTS-STLFELDQKISL 392
            .:.       .::....|..|     :|.::...||..|.  .|:..||.|: :.|.:.|.|:.:
  Fly   420 RDF-------NKIASDVDNNE-----IAAKTKNFSGAELE--GLVRAAQSTAMNRLIKADSKVHV 470

  Fly   393 ------------SDFLDAMLEALEQHLGEQRLLKLESMEQL 421
                        :|||.|:...::...|..:    |.:|.|
  Fly   471 DPEAMEKLRVTRADFLHALDNDIKPAFGAAQ----EMLENL 507

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pch2	NP_524282.4	RecA-like_Pch2-like	115..312	CDD:410916	45/174 (26%)
Nsf2	NP_788676.1	CDC48_N	9..89	CDD:215012
		CDC48_2	117..>170	CDD:215011
		RecA-like_NSF-SEC18_r1-like	224..400	CDD:410912	45/174 (26%)
		CDC48	<225..>611	CDD:273521	71/301 (24%)