DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and nvl

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_998649.1 Gene:nvl / 406805 ZFINID:ZDB-GENE-040426-2871 Length:796 Species:Danio rerio


Alignment Length:187 Identity:53/187 - (28%)
Similarity:87/187 - (46%) Gaps:25/187 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 ILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAEL 233
            :||.||||.|||.|.||:|....:         :.:.:....|.:.:..||.:.|.|:|.:    
Zfish   557 LLLAGPPGCGKTLLAKAVANASGL---------NFISVKGPELLNMYVGESERAVRQVFQR---- 608

  Fly   234 VSDPNNLVCVL-IDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQS 297
              ..|:..||: .||:::|...|   |.:|...::||||.:||::|.::....|.|:|.:|....
Zfish   609 --GRNSAPCVIFFDEIDALCPRR---SEHESGASVRVVNQLLTEMDGMENRRQVFIMAATNRPDI 668

  Fly   298 IDLAFV--DRADIRLFIGYPGI----SAIREIYKGMLAELMSAGVLQREVLESEDAE 348
            ||.|.:  .|.|..|::|.|..    :.:..|.||.....:.:.|...|:......|
Zfish   669 IDPAVLRPGRLDKTLYVGLPPAADRHAILNTITKGGTKPQLDSDVSLEEIAHDARCE 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 45/145 (31%)
nvlNP_998649.1 Nucleolin_bd 2..71 CDD:465247
CDC48 <218..796 CDD:273521 53/187 (28%)
Blue background indicates that the domain is not in the aligned region.

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