DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and spast

DIOPT Version :9

Sequence 1:NP_001287235.1 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_998080.2 Gene:spast / 405851 ZFINID:ZDB-GENE-040426-2331 Length:570 Species:Danio rerio


Alignment Length:285 Identity:78/285 - (27%)
Similarity:131/285 - (45%) Gaps:48/285 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 LKEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYTHL 203
            |:|.::..||...:|      |.:.|..|.:||.||||.|||.|.||:|.:         :....
Zfish   307 LQEIVILPALRPELF------TGLRAPARGLLLFGPPGNGKTMLAKAVAME---------SNATF 356

  Fly   204 VEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYARSAMSSNEPRDAMR 268
            ..|::.:|.||:..|..|||..||....||  .|:   .:.|||::||...|   ...|...:.|
Zfish   357 FNISAATLTSKYVGEGEKLVRALFAVAREL--QPS---IIFIDEIDSLLCER---REGEHDASRR 413

  Fly   269 VVNAVLTQLDSLKT--CPNVLILATSNLAQSIDLAFVDRADIRLFIGYPGISAIREIYKGMLAEL 331
            :....|.:.|.:::  ...||::..:|..|.:|.|.:.|...|:::..|......::.|.:|:: 
Zfish   414 LKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKLLKNLLSK- 477

  Fly   332 MSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKL-------PL--LAHAQYTSSTLFELD 387
                  .|..|..::     |:|||..:.|.||..|..|       |:  |...|..:.:..|: 
Zfish   478 ------HRNPLSQKE-----LSQLARLTDGYSGSDLTSLAKDAALGPIRELKPEQVRNMSAHEM- 530

  Fly   388 QKISLSDFLDAMLEALEQHLGEQRL 412
            :.|.:||||:: |:.:::.:..|.|
Zfish   531 RDIRISDFLES-LKRIKRSVSPQTL 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_001287235.1 AAA 166..315 CDD:214640 45/150 (30%)
AAA 169..314 CDD:278434 44/146 (30%)
spastNP_998080.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..269
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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