DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and CG14183

DIOPT Version :9

Sequence 1:NP_001287235.1 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_649172.3 Gene:CG14183 / 40192 FlyBaseID:FBgn0036931 Length:872 Species:Drosophila melanogaster


Alignment Length:451 Identity:91/451 - (20%)
Similarity:155/451 - (34%) Gaps:149/451 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LRSNAIRNNVE--TALKAYFQTARKLPRNVSFLP-DLTAEQT-EHVHSVLLERDNGGVQPLKVAE 81
            ||....::|.|  .|||..:...:|..|...  | |:|.::| |.:::.|  :|.|.::.:...:
  Fly   509 LREALAKDNDEKYKALKVKYPKKKKEKRKKK--PKDMTGDRTLESLYNEL--KDAGIIEEIGHRD 569

  Fly    82 -----TKFRFHFYATRPEEG--QLGLFSGEEGSDGIDSIVAASHALLPAAQFVGLWENLIYETGL 139
                 |.|.|....||.|:|  .||...|:                                   
  Fly   570 FDEFITDFNFVADDTRDEDGLTTLGPAKGD----------------------------------- 599

  Fly   140 KEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKL-----SIRTQGSYA 199
                :|..:...|......|   :...:.:||.||..:||..||:.:|.:|     ::..:.:|.
  Fly   600 ----IKMVIQESMLGMGEFD---VPKPKSLLLIGPLNSGKRLLCEIIASELDAVFMNLSPENTYK 657

  Fly   200 YTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYARSAMSSNEPR 264
            |...::...|.:..         ||:.|..           ..:.|:|...|.:.:      .|.
  Fly   658 YAKDLKYFLHVILK---------VAKAFQP-----------TIMYIEEAHRLFWKK------VPP 696

  Fly   265 DAMRVVNAVL-TQLDS-----LKTCPNVLILATSNLAQS----IDLAF-----VDRADIRLFIGY 314
            :|:.:...:| |.|.|     ||....::::.|||:..:    |..||     :.:.|.      
  Fly   697 EAVEINPRLLGTSLASKILKPLKKNDKIVLVGTSNMPWAANGGIKRAFQKVLLIPKCDY------ 755

  Fly   315 PGISAIREIYKGMLAELMS---------------AGVLQREVLESEDAEEGLLTQL-AERSVGLS 363
             |.|.:      :..|||:               |.|||  ...|.|.::.:...| .:|.:.|.
  Fly   756 -GTSFL------LWLELMTENAPDDMKEYAYSALARVLQ--AYNSGDIDDNVKETLNIDRKMRLK 811

  Fly   364 GRTLRKLPLLAH-AQYTSSTLFELDQKISLSDFLDAM---------LEALEQHLGEQRLLK 414
            ...|.....|.: .......:|..|:||     :|..         ||.|.:....|:|.|
  Fly   812 NEALDPNEFLEYFLSKNEPPIFPPDEKI-----MDKFNKWFGSSNKLEKLRKSYMAQKLAK 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_001287235.1 AAA 166..315 CDD:214640 34/168 (20%)
AAA 169..314 CDD:278434 34/164 (21%)
CG14183NP_649172.3 AAA 622..751 CDD:278434 33/154 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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