DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and smid

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster


Alignment Length:414 Identity:105/414 - (25%)
Similarity:172/414 - (41%) Gaps:83/414 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 NVETALKA-----YFQTARKLPRNVSFLPDLTAEQTEHV------HSVLLERDNGG-----VQPL 77
            |:||..||     ..::.:|.|:..:..|...|...::|      .:|..|.|:..     .:|.
  Fly   546 NIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPT 610

  Fly    78 KVAETKFRFHFYATRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAAQFVGL-------WENLIY 135
            ....|    :|....|||     |:.......:...|.|...:.|:|:..|.       |:::  
  Fly   611 LAELT----NFLDNPPEE-----FADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDI-- 664

  Fly   136 ETGLKEKL---LKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGS 197
              |..||:   ||.|:.|.:.....::...:.....:||.||||.|||.|.||:|.:..|     
  Fly   665 --GALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGI----- 722

  Fly   198 YAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVL-IDEVESLAYARSAMSSN 261
                :.:.:....|.:.:..||.:.|...|.:..      |:..||: .||.:||...||. ..:
  Fly   723 ----NFISVKGPELMNMYVGESERAVRACFQRAR------NSAPCVIFFDEFDSLCPKRSD-GGD 776

  Fly   262 EPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFV--DRADIRLFIGYPGISAIREIY 324
            ......|:||.:||::|.::....|.|||.:|....||.|.:  .|.|..|::|:|..|...||.
  Fly   777 GNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEIL 841

  Fly   325 KGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQK 389
            |.....    |  :|.|| ::|.:   |.::|.::.|.:|..|..|       ...:::|.|.|.
  Fly   842 KATTKN----G--KRPVL-ADDVD---LDEIAAQTEGYTGADLAGL-------VKQASMFSLRQS 889

  Fly   390 ISLSDF-LDAML-------EALEQ 405
            ::..|. ||.:.       |||:|
  Fly   890 LNNGDTNLDDLCVRSQHFQEALQQ 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 57/209 (27%)
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 105/414 (25%)
Blue background indicates that the domain is not in the aligned region.

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