DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and Trip13

DIOPT Version :9

Sequence 1:NP_001287235.1 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001011930.1 Gene:Trip13 / 292206 RGDID:1308516 Length:432 Species:Rattus norvegicus


Alignment Length:434 Identity:188/434 - (43%)
Similarity:264/434 - (60%) Gaps:44/434 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LSNSDTVHVEVCLR-GNDLRSNAIRNNVETALKAYFQTARKLPRNVSFLPDLTAE-----QTEHV 62
            ::.|..|||||..| |:..:...|:.:|...||.:         |:.|...:..|     .|.:|
  Rat    15 VAESPAVHVEVLQRSGSTAKKEDIKQSVYRLLKRH---------NIVFGDYVWTEFDEPFLTRNV 70

  Fly    63 HSVLL---ERDNGGVQPLKVAETKFRFHFYATRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAA 124
            .||.:   |......||:.::......|.:... |||.    |.|...:..::|:||||.:||||
  Rat    71 QSVSIVDTELKAKDPQPIDLSACTIALHIFQLN-EEGP----SSENLDEETENIIAASHWVLPAA 130

  Fly   125 QFVGLWENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQK 189
            :|.|||::|:|:..:|..||.:.::.|:||:..||:|:|..||::||||||||||||||||||||
  Rat   131 EFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQK 195

  Fly   190 LSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYA 254
            |:||....|.|..|:|||||||||||||||||||.::|.||.:|:.|...||.|||||||||..|
  Rat   196 LTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESLTAA 260

  Fly   255 RSAMSSN-EPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFVDRADIRLFIGYPGIS 318
            |:|..:. ||.||:|||||||||:|.:|...||:||.|||:.:.||:||||||||:.:||.|..:
  Rat   261 RNACRAGAEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFVDRADIKQYIGPPSAA 325

  Fly   319 AIREIYKGMLAELMSAGVL--QREVLESEDAE------------EGLLTQLAERSVGLSGRTLRK 369
            ||.:||...|.|||...::  ::::|...:.|            ..||::::.:|.|||||.|||
  Rat   326 AIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGFIENNVSKLSLLLSEISRKSEGLSGRVLRK 390

  Fly   370 LPLLAHAQYTSSTLFELDQKISLSDFLDAMLEALEQHLGEQRLL 413
            ||.||||.|..:      ..:::..||.|:..|:::...|::.|
  Rat   391 LPFLAHALYIQA------PSVTIEGFLQALSLAVDKQFEEKKKL 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_001287235.1 AAA 166..315 CDD:214640 100/149 (67%)
AAA 169..314 CDD:278434 97/145 (67%)
Trip13NP_001011930.1 RecA-like_Pch2-like 121..319 CDD:410916 122/197 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338514
Domainoid 1 1.000 192 1.000 Domainoid score I3126
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3125
Inparanoid 1 1.050 307 1.000 Inparanoid score I2548
OMA 1 1.010 - - QHG57461
OrthoDB 1 1.010 - - D1036414at2759
OrthoFinder 1 1.000 - - FOG0005740
OrthoInspector 1 1.000 - - oto95495
orthoMCL 1 0.900 - - OOG6_103946
Panther 1 1.100 - - LDO PTHR45991
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4134
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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