DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and Trip13

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001011930.1 Gene:Trip13 / 292206 RGDID:1308516 Length:432 Species:Rattus norvegicus


Alignment Length:434 Identity:188/434 - (43%)
Similarity:264/434 - (60%) Gaps:44/434 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LSNSDTVHVEVCLR-GNDLRSNAIRNNVETALKAYFQTARKLPRNVSFLPDLTAE-----QTEHV 62
            ::.|..|||||..| |:..:...|:.:|...||.:         |:.|...:..|     .|.:|
  Rat    15 VAESPAVHVEVLQRSGSTAKKEDIKQSVYRLLKRH---------NIVFGDYVWTEFDEPFLTRNV 70

  Fly    63 HSVLL---ERDNGGVQPLKVAETKFRFHFYATRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAA 124
            .||.:   |......||:.::......|.:... |||.    |.|...:..::|:||||.:||||
  Rat    71 QSVSIVDTELKAKDPQPIDLSACTIALHIFQLN-EEGP----SSENLDEETENIIAASHWVLPAA 130

  Fly   125 QFVGLWENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQK 189
            :|.|||::|:|:..:|..||.:.::.|:||:..||:|:|..||::||||||||||||||||||||
  Rat   131 EFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQK 195

  Fly   190 LSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYA 254
            |:||....|.|..|:|||||||||||||||||||.::|.||.:|:.|...||.|||||||||..|
  Rat   196 LTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESLTAA 260

  Fly   255 RSAMSSN-EPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFVDRADIRLFIGYPGIS 318
            |:|..:. ||.||:|||||||||:|.:|...||:||.|||:.:.||:||||||||:.:||.|..:
  Rat   261 RNACRAGAEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFVDRADIKQYIGPPSAA 325

  Fly   319 AIREIYKGMLAELMSAGVL--QREVLESEDAE------------EGLLTQLAERSVGLSGRTLRK 369
            ||.:||...|.|||...::  ::::|...:.|            ..||::::.:|.|||||.|||
  Rat   326 AIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGFIENNVSKLSLLLSEISRKSEGLSGRVLRK 390

  Fly   370 LPLLAHAQYTSSTLFELDQKISLSDFLDAMLEALEQHLGEQRLL 413
            ||.||||.|..:      ..:::..||.|:..|:::...|::.|
  Rat   391 LPFLAHALYIQA------PSVTIEGFLQALSLAVDKQFEEKKKL 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 122/197 (62%)
Trip13NP_001011930.1 McrB 34..>205 CDD:441011 70/184 (38%)
RecA-like_Pch2-like 121..319 CDD:410916 122/197 (62%)

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