DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pch2 and Pex6

DIOPT Version :9

Sequence 1:NP_001287235.1 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_663463.1 Gene:Pex6 / 224824 MGIID:2385054 Length:981 Species:Mus musculus


Alignment Length:518 Identity:116/518 - (22%)
Similarity:180/518 - (34%) Gaps:176/518 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 VETALKAYFQTARKLPRNVSFLPDLTAEQTEHVHSVLLERDNGGV-------------------- 74
            |||.|:|.|..||:....|..   |||..       ||.||..|:                    
Mouse   508 VETKLQATFSRARRCRPAVLL---LTAVD-------LLGRDRDGLGEDARVAATLRHLLLDEDAL 562

  Fly    75 ---QPLKVAETKFRFHFYATR-----PEEGQLGLFSGEEGSDGIDSIVAASHALLPAAQFVGLWE 131
               .||.|..|..|.....|.     |.|.::.:.|..:..    ||:.|..|.||..|.|.|.:
Mouse   563 SRCPPLMVVATTSRVQDLPTDVQTAFPHELEVPVLSEAQRL----SILQALTAHLPLGQEVNLPQ 623

  Fly   132 --------------NLIYET---------------GLKEK------LLKFALSALMFSE-----H 156
                          .|:..|               ||.|:      :..|.|.|..|.:     .
Mouse   624 LARRCAGFVVGDLYALLTHTCRAACTRIRASGSAGGLSEEDEGDLCVAGFPLLAEDFGQALDQLQ 688

  Fly   157 RVDTNVIACNRL----------------------------------------ILLHGPPGTGKTS 181
            ...:..:...|:                                        :|||||||||||.
Mouse   689 TAHSQAVGAPRIPSVSWHDVGGLQDVKKEILETIQLPLEHPELLSLGLRRSGLLLHGPPGTGKTL 753

  Fly   182 LCKALAQKLSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVL-I 245
            |.||:|.:.|:.         .:.:....|.:.:..:|.:.|.::|.:......      |:: .
Mouse   754 LAKAVATECSLT---------FLSVKGPELINMYVGQSEENVREVFARARAAAP------CIIFF 803

  Fly   246 DEVESLAYARSAMSSNEPRDAM-RVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFV--DRAD 307
            ||::|||.:|.  .|.:....| |||:.:|.:||.|.:..:|.::..:|....:|.|.:  .|.|
Mouse   804 DELDSLAPSRG--RSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFD 866

  Fly   308 IRLFIGYPG--------ISAIREIYKGMLAELMSAGVLQ--REVLESED----AEEGLLTQLAER 358
            ..:|:|...        :|||...:| :.|.:..|.||.  ...|...|    ..:.::|.|..|
Mouse   867 KLVFVGASEDRASQLRVLSAITRKFK-LEASVSLANVLDCCPPQLTGADLYSLCSDAMMTALKRR 930

  Fly   359 SVGL-SGRTLRKLPLLAHAQYTSSTLFELDQKISLSDFLDAMLEALEQHLGEQRLLKLESMEQ 420
            ...| .|..||...||                :::.|.|.|... |:..:.||.||:.:.:::
Mouse   931 VRDLEEGLELRSSALL----------------LTMEDLLQAAAR-LQPSVSEQELLRYKRIQR 976

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_001287235.1 AAA 166..315 CDD:214640 45/192 (23%)
AAA 169..314 CDD:278434 43/148 (29%)
Pex6NP_663463.1 SpoVK 464..968 CDD:223540 114/508 (22%)
AAA 467..596 CDD:278434 25/97 (26%)
AAA 744..872 CDD:278434 41/144 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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