DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and mac-1

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_496814.1 Gene:mac-1 / 174974 WormBaseID:WBGene00003119 Length:813 Species:Caenorhabditis elegans


Alignment Length:403 Identity:100/403 - (24%)
Similarity:164/403 - (40%) Gaps:99/403 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 GNDLRSNAIRNNVETALKAYFQTARKLPRNVSFLPDLTAEQ-TEHVHSVL--LERD--------- 70
            |.||:: .||...:.|:...|.|.  :.:|... .:||.|| .|.:..||  |:.|         
 Worm   437 GADLQA-LIREAAKVAIDRVFDTI--VVKNEGH-KNLTVEQIKEELDRVLAWLQGDDDPSALSEL 497

  Fly    71 NGGVQPLKVAETKFRFHFYATRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAAQFVGL------ 129
            |||:|                         .|.|:....:.:|       .|||:..|.      
 Worm   498 NGGLQ-------------------------ISFEDFERALSTI-------QPAAKREGFATVPDV 530

  Fly   130 -WENLIYETGLKEKLLKFALSALMFSEHRVDTNV---IACN-RLILLHGPPGTGKTSLCKALAQK 189
             |:::    |...::.|....::::...|.|...   |.|. :.|||.||||.|||.|.||:|.:
 Worm   531 SWDDI----GALVEVRKQLEWSILYPIKRADDFAALGIDCRPQGILLCGPPGCGKTLLAKAVANE 591

  Fly   190 LSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVL-IDEVESLAY 253
            ..:         :.:.:....|.:.:..||.:.|..:|.:..:  |.|    ||: .||:::|..
 Worm   592 TGM---------NFISVKGPELLNMYVGESERAVRTVFQRARD--SQP----CVIFFDEIDALVP 641

  Fly   254 ARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFV--DRADIRLFIGYPG 316
            .|   |..|.....|:||.:||::|.::....|.::..:|....:|.|.:  .|.|..||:.:|.
 Worm   642 KR---SHGESSGGARLVNQLLTEMDGVEGRQKVFLIGATNRPDIVDAAILRPGRLDKILFVDFPS 703

  Fly   317 ISAIREIYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKLPLLAHAQYTSS 381
            :    |....:|.:....|.  |.:| .||.:...:.||.|    |:|.|...|..|.|    .|
 Worm   704 V----EDRVDILRKSTKNGT--RPML-GEDIDFHEIAQLPE----LAGFTGADLAALIH----ES 753

  Fly   382 TLFELDQKISLSD 394
            :|..|..::..:|
 Worm   754 SLLALQARVLEND 766

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 53/210 (25%)
mac-1NP_496814.1 Nucleolin_bd 5..65 CDD:465247
CDC48 <191..804 CDD:273521 100/403 (25%)
Blue background indicates that the domain is not in the aligned region.

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