Protein Alignment pch2 and cdc-48.2

DIOPT Version :10

• Sequence 1: NP_524282.4
• Gene: pch2 / 41013
• FlyBaseID: FBgn0051453
• Length: 421
• Species: Drosophila melanogaster
• Sequence 2: NP_495705.1
• Gene: cdc-48.2 / 174309
• WormBaseID: WBGene00008053
• Length: 810
• Species: Caenorhabditis elegans
• Alignment Length: 245
• Identity: 72/245 - (29%)
• Similarity: 107/245 - (43%)
• Gaps: 46/245 - (18%)

  Fly   129 LWENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIR 193
            |.|.:.|.....||.|||.:..               :|.:|.:||||.|||.|.||:|.:
 Worm   494 LQELVQYPVEHPEKYLKFGMQP---------------SRGVLFYGPPGCGKTLLAKAIANE---- 539

  Fly   194 TQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVL-IDEVESLAYARSA 257
                 ...:.:.|....|.:.||.||...|..:|:|......      ||| .||::|:|.||..
 Worm   540 -----CQANFISIKGPELLTMWFGESEANVRDVFDKARAAAP------CVLFFDELDSIAKARGG 593

  Fly   258 MSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFV--DRADIRLFIGYPGISAI 320
            ...:....|.||:|.|||::|.:....||.|:..:|....||.|.:  .|.|..::|..|..::.
 Worm   594 SVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASR 658

  Fly   321 REIYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKL 370
            .:|:|..|          |:...|.|.:   |..||:.:||.||..|.::
 Worm   659 LQIFKASL----------RKTPLSADLD---LNFLAKNTVGFSGADLTEI 695

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pch2	NP_524282.4	RecA-like_Pch2-like	115..312	CDD:410916	56/185 (30%)
cdc-48.2	NP_495705.1	CDC48	44..773	CDD:273521	72/245 (29%)