DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pch2 and pch2

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_321602.6 Gene:pch2 / 1281656 VectorBaseID:AGAMI1_005586 Length:445 Species:Anopheles gambiae


Alignment Length:441 Identity:185/441 - (41%)
Similarity:259/441 - (58%) Gaps:70/441 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 NDLRSNAIRNNVETALKAYFQTARKLPRNVSFLPDLTAEQTEHVHSVLLERD------NGGVQPL 77
            ||:.:..||  :|.|....|..:::           :.|..:|||.::.||:      ...:..|
Mosquito     2 NDISAPTIR--IEVACTRGFNKSQQ-----------SCEVYQHVHDIIEERETIRMGTTFTIPVL 53

  Fly    78 KVAETK-------------FRFHFYATRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAAQFVGL 129
            .|.:.:             .:|:||..:.::|..     |..:...:.:..:.|.||||.:..||
Mosquito    54 SVLQVEVCTDVDQYTPRSALQFNFYVLQDQDGVT-----ETITHCAEEMEISHHMLLPARELHGL 113

  Fly   130 WENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRT 194
            ||:||||.|:|:.:|.||.::::|:...||.|:|.||||.|.||||||||||||||:|||||||.
Mosquito   114 WESLIYEEGIKDSVLAFAETSMLFARKGVDKNLITCNRLALFHGPPGTGKTSLCKAIAQKLSIRL 178

  Fly   195 QGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYARSAMS 259
            ...|.:.||||||||||||:|||||||||.::|::|..|:.|..:|||||:||:||:||||..:|
Mosquito   179 NEQYRHAHLVEINSHSLFSRWFSESGKLVQKVFSEIVALLEDERSLVCVLVDEIESIAYARDRIS 243

  Fly   260 SNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFVDRADIRLFIGYPGISAIREIY 324
            ||||.|::|||||||||||.|:..|||.|||||||..|||.||:||||...:||:|...||.:||
Mosquito   244 SNEPSDSIRVVNAVLTQLDRLRRFPNVFILATSNLTDSIDAAFLDRADFVQYIGHPTEPAIYDIY 308

  Fly   325 KGMLAELMSAGVLQREVLESE--------DAEEG-------------------LLTQLAERSVGL 362
            :..|..|.:.|::::|...|.        :..:|                   :|.|:.:.|.||
Mosquito   309 RSALYNLQTIGIVEKEANTSNRRLSQTAANTTDGIPSYEQAIDPARPSSTMLDILLQVVKLSAGL 373

  Fly   363 SGRTLRKLPLLAHAQYTSSTLFELDQKISLSDFLDAMLEALEQHLGEQRLL 413
            |||||||:|.||||.|...      :..|:.:||.||.:|:.:...::|||
Mosquito   374 SGRTLRKIPFLAHALYVKK------ETESVLNFLTAMRQAIRKVRNDKRLL 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 125/196 (64%)
pch2XP_321602.6 None

Return to query results.
Submit another query.