DRSC/TRiP Functional Genomics Resources

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Protein Alignment pch2 and LOC1280704

DIOPT Version :10

Sequence 1:NP_524282.4 Gene:pch2 / 41013 FlyBaseID:FBgn0051453 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_320566.4 Gene:LOC1280704 / 1280704 VectorBaseID:AGAMI1_011266 Length:860 Species:Anopheles gambiae


Alignment Length:439 Identity:87/439 - (19%)
Similarity:160/439 - (36%) Gaps:138/439 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LRGNDLRSNAIRNNVETALKAYFQTARKLPRNVSFLPDLTA---EQTE----------------- 60
            |:|:.....|.:...|.:|:.....|.| |...||||::.:   |.||                 
Mosquito   404 LKGSGKEKLAQKKPGELSLEEGLDKAFK-PMQSSFLPEIKSGIEEYTEVWKGKDESQNLRQTYYD 467

  Fly    61 ---------------------------HVHSVLLERDNGGVQPLKVAETKFRFHFYATRPEEGQL 98
                                       .:..:.||||.|| :.||.:..|.|             
Mosquito   468 DMIYEEKYADVEAELRRIVDEIMRQELELLQIALERDRGG-KKLKKSSKKAR------------- 518

  Fly    99 GLFSGEEGSDGIDSIVAASHALLPAAQFVGLWENLIY--------ETGLKEKL--LKFAL-SALM 152
              .||::|....|.      .|.|......|:|.|:.        ||.:|..:  |.:|. |||.
Mosquito   519 --RSGKKGKKKKDK------DLTPDRTTESLFEELVTNGIIKKYPETPIKSYVGDLSYAARSALN 575

  Fly   153 FSEHRV--------------DT--NVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAYT 201
            .|...|              :|  |...|.:.:|:.||.|:|||||..|:..:     .||.   
Mosquito   576 PSPGDVRQLIKQYCILPLGSETIRNFGPCIKSLLIAGPKGSGKTSLVHAICTE-----TGSV--- 632

  Fly   202 HLVEINSHSLFSKWFSESGK-LVAQLFNKIAELVSDPNNLVCVLIDEVESLAYARSA-------M 258
             |.:|:..::..|:..:||. ::..|.:|::.|:.             .|:.|...|       :
Mosquito   633 -LFDISPPNIVGKYPGKSGLIMLMHLISKVSRLLQ-------------PSVIYFGDAEKPFMKKI 683

  Fly   259 SSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFVDRADIR-LFIGYPGISAIRE 322
            ...:..|..|:...:...:.:::....::::.||:.....|:..:.:...| ::|..|...|:..
Mosquito   684 PKTDRTDPKRLKKDLPKLVKNIQPEDRIMLIGTSDCPWEGDMKLMVQTYQRFIYIPRPDYGALSF 748

  Fly   323 IYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAE-RSVGLSGRTLRKL 370
            .:|.:|:..  :||       ....:.|.:.:::: .::|...|.:|::
Mosquito   749 AWKELLSHY--SGV-------HRQFDTGAMAKISDGYTIGSVVRCIREV 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pch2NP_524282.4 RecA-like_Pch2-like 115..312 CDD:410916 47/232 (20%)
LOC1280704XP_320566.4 None

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