DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9684 and Smyd1

DIOPT Version :9

Sequence 1:NP_649797.2 Gene:CG9684 / 41000 FlyBaseID:FBgn0037583 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001153599.1 Gene:Smyd1 / 12180 MGIID:104790 Length:490 Species:Mus musculus


Alignment Length:496 Identity:97/496 - (19%)
Similarity:174/496 - (35%) Gaps:129/496 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 CVHCANAAERVCQRCGD----FYCSKHCQRQDWLRHRYICIPLPALVS-PNE------YSVFQSD 73
            |..|....|:: .|||.    .||.:.||:..||.|:..|..:..... |||      ..:::.:
Mouse    52 CHTCFKRQEKL-HRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVE 115

  Fly    74 REST-LEGACSLNADKSVVEASPIPLSRSPILPDLQ--CNNAGRSSIIAAKDDIPVS----PPKA 131
            ||.| |...|.::.|                  |||  ..:.|.......:.|:...    ||::
Mouse   116 REGTGLTEGCLVSVD------------------DLQNHVEHFGEEEQKELRVDVDTFLQYWPPQS 162

  Fly   132 IIPPSGAMVYITDFISSNRCYIRDASESAERAFDEVCKKVNTIATLLPRI----KNPPPNRLCLV 192
               ...:|.||:.......|  ...:.|.:|....|.      ..:.|.:    .:..||  |.|
Mouse   163 ---QQFSMQYISHIFGVINC--NGFTLSDQRGLQAVG------VGIFPNLGLVNHDCWPN--CTV 214

  Fly   193 HF-NGMY--VRAKMCKKLR-EVSHLFLVDLGIKHSGPFFDFKDINDELKALPCSSQLVQLKNV-- 251
            .| ||.:  |::....::| |:..|..:..|.:.:..:.||..:::|.:.        |||..  
Mouse   215 IFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRR--------QLKKQYY 271

  Fly   252 --LNCDYSNDVIAFNSKFVGKKYMATIKKCPGLHLVELVNTEMNFSVN--EQLNAFFNSKKLLRN 312
              .:|::.       .|.:........|:.| ....|:|...:.||.:  |:::.       .|:
Mouse   272 FDCSCEHC-------QKGLKDDLFLAAKEDP-KPSQEVVKEMIQFSKDTLEKIDK-------ARS 321

  Fly   313 PNSAAENIKSC--SLEGPQPSHIDQPIAIPAI--ECKKMLTKPEVQNECEEI----------LKQ 363
            .....|.:|.|  .||..:|...|..:.:..:  ...::|:..:...|....          |..
Mouse   322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386

  Fly   364 QNSGQID----QSKSTN-------------------VLVTEGASNKMLGFIDLADKATKTDQDTA 405
            .|:.|:.    ::..||                   :|||.|.|:.:..  ||.....:|:.:..
Mouse   387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK--DLEAMRMQTEMELR 449

  Fly   406 PKPKDEDVKHSLTQCLTPKANYPLQLPNHKKNLELPVI-HK 445
            ...::|.:.|.:.:...  .|.|:|:.....|...|.: ||
Mouse   450 MFRQNEFMYHKMREAAL--NNQPMQVMAEPSNEPAPALFHK 488

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG9684NP_649797.2 zf-MYND 20..55 CDD:280009 13/38 (34%)
TUDOR 132..250 CDD:278965 25/125 (20%)
TUDOR 527..574 CDD:119391
Smyd1NP_001153599.1 SET_SMYD1 7..281 CDD:380924 57/275 (21%)
S-adenosyl-L-methionine binding 17..19
zf-MYND 52..90 CDD:396356 13/38 (34%)