DRSC/TRiP Functional Genomics Resources

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Protein Alignment stck and Fblim1

DIOPT Version :9

Sequence 1:NP_731242.1 Gene:stck / 40999 FlyBaseID:FBgn0020249 Length:348 Species:Drosophila melanogaster
Sequence 2:XP_006539276.1 Gene:Fblim1 / 74202 MGIID:1921452 Length:397 Species:Mus musculus


Alignment Length:213 Identity:62/213 - (29%)
Similarity:84/213 - (39%) Gaps:38/213 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 CTRCADGFEPTEKIVNSNGELWHTQCFVCAQCFRPFQDGIFYEFEGRKYCERDFHVLFAPC---- 81
            |..|.....|.|..|.:....:|.|||.|..|.|......||:.:||..||        ||    
Mouse   207 CGFCHKPVSPRELAVEAMKRQYHAQCFTCRTCRRQLAGQRFYQKDGRPLCE--------PCYQDT 263

  Fly    82 ---CNKCGEFVIGRVIKAMSASWHPQCFRCQLCAKELADCGF-IKNQNRALCHECNAKVKAEITG 142
               |.||||.|...||:|:..::||.||.|..||:.::|..| :.:||:..|       .|:...
Mouse   264 LEKCGKCGEVVQEHVIRALGKAFHPPCFTCVTCARCISDESFALDSQNQVYC-------VADFYR 321

  Fly   143 RY--VCQKCHGLI------DEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNE 199
            ::  ||..|...|      |...:...|..:|...:.|..|...|.....:....|   .||  .
Mouse   322 KFAPVCSICENPIIPRDGKDAFKIECMGRNFHENCYRCEDCSVLLSVEPTDQGCYP---LND--H 381

  Fly   200 LYCLRCHDKMGIPICGAC 217
            |:|..||.|..  ..|.|
Mouse   382 LFCKPCHLKRS--AAGCC 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stckNP_731242.1 LIM1_PINCH 21..79 CDD:188717 18/57 (32%)
LIM2_PINCH 82..133 CDD:188718 21/51 (41%)
LIM3_PINCH 146..206 CDD:188719 14/65 (22%)
LIM4_PINCH 212..265 CDD:188720 2/6 (33%)
LIM5_PINCH 273..326 CDD:188721
Fblim1XP_006539276.1 LIM <203..260 CDD:351770 19/60 (32%)
LIM2_FBLP-1 267..319 CDD:188758 22/58 (38%)
LIM3_Zyxin_like 327..388 CDD:188743 14/65 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.900

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