DRSC/TRiP Functional Genomics Resources

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Protein Alignment stck and lims2

DIOPT Version :10

Sequence 1:NP_731242.1 Gene:stck / 40999 FlyBaseID:FBgn0020249 Length:348 Species:Drosophila melanogaster
Sequence 2:NP_001018506.2 Gene:lims2 / 553696 ZFINID:ZDB-GENE-050522-56 Length:377 Species:Danio rerio


Alignment Length:326 Identity:203/326 - (62%)
Similarity:249/326 - (76%) Gaps:11/326 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 CTRCADGFEPTEKIVNSNGELWHTQCFVCAQCFRPFQDGIFYEFEGRKYCERDFHVLFAPCCNKC 85
            |.||...|.||||:|||||||:|.|||.|||||:....|:|||||||||||.||.:||||||::|
Zfish    56 CERCKSSFSPTEKMVNSNGELYHEQCFTCAQCFQQLIQGLFYEFEGRKYCEHDFQMLFAPCCHQC 120

  Fly    86 GEFVIGRVIKAMSASWHPQCFRCQLCAKELADCGFIKNQNRALCHECNAKVKAEITGRYVCQKCH 150
            ||||:|||||||::||||.||.|::|...|||.||:|:..|.||..|:::.||...|::|||||.
Zfish   121 GEFVVGRVIKAMNSSWHPDCFCCEVCEAVLADVGFVKSGGRPLCRSCHSRQKALSLGKHVCQKCL 185

  Fly   151 GLIDEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNELYCLRCHDKMGIPICG 215
            .:: ||||.:|.:.||..||:|:.||.||.:.|||:|          .|||||.||||:|:||||
Zfish   186 CVV-EEPLMYRSDPYHPDHFNCSHCGKELTADARELK----------GELYCLPCHDKLGVPICG 239

  Fly   216 ACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGHRHYEKRGLAYCETHYHQLFGNLCFVCNQVI 280
            |||||:|.|||.|:||.||||||||.|||||||||||||::|||||||||:||||::||.||:||
Zfish   240 ACRRPVEGRVVNAMGKQWHVEHFVCVKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFQCNRVI 304

  Fly   281 GGDVFTALNKAWCVHHFACSVCDTKMTQKSKFYEYDEKPVCKKCYDRFPNELRRRLRTAHEMTMK 345
            .|||.:||||||||..|:||.|.:::|.|.||.|.|.|||||.||:|.|:||:|||....|...|
Zfish   305 EGDVVSALNKAWCVRCFSCSTCTSRLTLKDKFVEIDLKPVCKHCYERMPDELKRRLSREQESRDK 369

  Fly   346 K 346
            :
Zfish   370 R 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stckNP_731242.1 LIM1_PINCH 21..79 CDD:188717 39/57 (68%)
LIM2_PINCH 82..133 CDD:188718 30/50 (60%)
LIM3_PINCH 146..206 CDD:188719 27/59 (46%)
LIM4_PINCH 212..265 CDD:188720 44/52 (85%)
LIM5_PINCH 273..326 CDD:188721 33/52 (63%)
lims2NP_001018506.2 LIM1_PINCH 56..114 CDD:188717 39/57 (68%)
LIM2_PINCH 117..168 CDD:188718 30/50 (60%)
LIM3_PINCH 181..230 CDD:188719 27/59 (46%)
LIM4_PINCH 236..289 CDD:188720 44/52 (85%)
LIM5_PINCH 297..350 CDD:188721 33/52 (63%)

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