DRSC/TRiP Functional Genomics Resources

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Protein Alignment stck and Lims1

DIOPT Version :9

Sequence 1:NP_731242.1 Gene:stck / 40999 FlyBaseID:FBgn0020249 Length:348 Species:Drosophila melanogaster
Sequence 2:XP_017457250.1 Gene:Lims1 / 499443 RGDID:1560732 Length:407 Species:Rattus norvegicus


Alignment Length:337 Identity:219/337 - (64%)
Similarity:262/337 - (77%) Gaps:13/337 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MYSKAEVVQAANM--SLGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCAQCFRPFQDGIFYEF 64
            :|| |...:.:||  :|.:..|.||..||:|.||||||||||:|.|||||||||:.|.:|:||||
  Rat    61 IYS-AVKTKTSNMANALASATCERCKGGFDPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEF 124

  Fly    65 EGRKYCERDFHVLFAPCCNKCGEFVIGRVIKAMSASWHPQCFRCQLCAKELADCGFIKNQNRALC 129
            |||||||.||.:||||||::||||:||||||||:.||||:||||.||.:.|||.||:||..|.||
  Rat   125 EGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLC 189

  Fly   130 HECNAKVKAEITGRYVCQKCHGLIDEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAA 194
            ..|:.:.||...|:|:|||||.:|||:||.|:.:.||..||:|..||.||.:.|||:|       
  Rat   190 RPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELK------- 247

  Fly   195 NDMNELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGHRHYEKRGLA 259
               .|||||.||||||:|||||||||||.|||.|:||.||||||||||||||||||||||::|||
  Rat   248 ---GELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLA 309

  Fly   260 YCETHYHQLFGNLCFVCNQVIGGDVFTALNKAWCVHHFACSVCDTKMTQKSKFYEYDEKPVCKKC 324
            ||||||:||||::||.||:||.|||.:||||||||..||||.|:||:|.|.||...|.|||||.|
  Rat   310 YCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVAIDLKPVCKYC 374

  Fly   325 YDRFPNELRRRL 336
            |::.|.||:|||
  Rat   375 YEKMPEELKRRL 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stckNP_731242.1 LIM1_PINCH 21..79 CDD:188717 42/57 (74%)
LIM2_PINCH 82..133 CDD:188718 33/50 (66%)
LIM3_PINCH 146..206 CDD:188719 29/59 (49%)
LIM4_PINCH 212..265 CDD:188720 46/52 (88%)
LIM5_PINCH 273..326 CDD:188721 35/52 (67%)
Lims1XP_017457250.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348848
Domainoid 1 1.000 118 1.000 Domainoid score I5711
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68428
Inparanoid 1 1.050 499 1.000 Inparanoid score I1317
OMA 1 1.010 - - QHG51900
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 1 1.000 - - otm46094
orthoMCL 1 0.900 - - OOG6_103991
Panther 1 1.100 - - LDO PTHR24210
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X39
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.810

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