DRSC/TRiP Functional Genomics Resources

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Protein Alignment stck and fhl2b

DIOPT Version :9

Sequence 1:NP_731242.1 Gene:stck / 40999 FlyBaseID:FBgn0020249 Length:348 Species:Drosophila melanogaster
Sequence 2:NP_001006028.2 Gene:fhl2b / 450007 ZFINID:ZDB-GENE-041010-121 Length:279 Species:Danio rerio


Alignment Length:293 Identity:71/293 - (24%)
Similarity:115/293 - (39%) Gaps:41/293 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 CAQCFRPFQDGIFYEFEGRKYCERD--------FHVLFAPCCNKCGEFVIG---RVIKAMSASWH 102
            |..|    ::.:|    |:||..||        :..|::..|.:|.: .||   |.:......||
Zfish     7 CHYC----KESLF----GKKYVLRDENPYCVKCYESLYSNTCEECKK-PIGCNSRDLSYKDRHWH 62

  Fly   103 PQCFRCQLCAKELADCGFIKNQNRALCHECNAKVKAEITGRYVCQKCHGLI--DEEPLRFRGEVY 165
            ..||.|..|.:.|.|..|.....:.||.||.:.   |.:.:  |.:|...|  ....:..:|..:
Zfish    63 DDCFHCFKCHRSLVDKPFSTKDEQLLCTECYSN---EYSSK--CFECKKTIMPGSRKMEHKGNSW 122

  Fly   166 HGYHFSCTACGTELDSTAREVKSRPGLAANDMNELYCLRCHDKMGIPICGACRRPIEERVVTALG 230
            |...|:|..|...:.:.:...|.         |..||:.|::|.....|..|::||....||...
Zfish   123 HETCFTCQRCQQPIGTKSFIPKD---------NSNYCVPCYEKQFALQCVQCKKPITTGGVTYHD 178

  Fly   231 KHWHVEHFVCAKCEKPFLGHRHYEKRGLAYCETHYHQLFGNLCFVCNQVI---GGDVFTAL-NKA 291
            :.||.:.|:|..|::...|.|...:....||...:..|:...|..|...|   ||..:.:. .:.
Zfish   179 QPWHKDCFLCTGCKQQLSGQRFTSRDDFPYCLNCFCNLYAKKCAACTTPISGLGGSKYISFEERQ 243

  Fly   292 WCVHHFACSVCDTKMTQKSKFYEYDEKPVCKKC 324
            |....|.|..|...:..:....|.|: .:|.:|
Zfish   244 WHNDCFNCKKCSVSLVGRGFLTERDD-ILCPEC 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stckNP_731242.1 LIM1_PINCH 21..79 CDD:188717 9/37 (24%)
LIM2_PINCH 82..133 CDD:188718 17/53 (32%)
LIM3_PINCH 146..206 CDD:188719 12/61 (20%)
LIM4_PINCH 212..265 CDD:188720 15/52 (29%)
LIM5_PINCH 273..326 CDD:188721 13/56 (23%)
fhl2bNP_001006028.2 LIM <7..33 CDD:295319 8/33 (24%)
LIM 36..97 CDD:295319 18/64 (28%)
LIM 101..157 CDD:295319 13/64 (20%)
LIM3_Fhl2 162..218 CDD:188815 16/55 (29%)
LIM4_FHL2 221..278 CDD:188817 13/56 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG51900
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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