DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stck and LIMS1

DIOPT Version :9

Sequence 1:NP_731242.1 Gene:stck / 40999 FlyBaseID:FBgn0020249 Length:348 Species:Drosophila melanogaster
Sequence 2:NP_001358423.1 Gene:LIMS1 / 3987 HGNCID:6616 Length:398 Species:Homo sapiens


Alignment Length:348 Identity:220/348 - (63%)
Similarity:263/348 - (75%) Gaps:18/348 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 YSKAEVVQAANMSLGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCAQCFRPFQDGIFYEFEGR 67
            |:|..:..|    |.:..|.||..||.|.||||||||||:|.|||||||||:.|.:|:|||||||
Human    58 YAKFNMANA----LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR 118

  Fly    68 KYCERDFHVLFAPCCNKCGEFVIGRVIKAMSASWHPQCFRCQLCAKELADCGFIKNQNRALCHEC 132
            ||||.||.:||||||::||||:||||||||:.||||:||||.||.:.|||.||:||..|.||..|
Human   119 KYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPC 183

  Fly   133 NAKVKAEITGRYVCQKCHGLIDEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDM 197
            :.:.||...|:|:|||||.:|||:||.|:.:.||..||:|..||.||.:.|||:|          
Human   184 HNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELK---------- 238

  Fly   198 NELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGHRHYEKRGLAYCE 262
            .|||||.||||||:|||||||||||.|||.|:||.||||||||||||||||||||||::||||||
Human   239 GELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCE 303

  Fly   263 THYHQLFGNLCFVCNQVIGGDVFTALNKAWCVHHFACSVCDTKMTQKSKFYEYDEKPVCKKCYDR 327
            |||:||||::||.||:||.|||.:||||||||:.||||.|:||:|.|.||.|.|.|||||.||::
Human   304 THYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKDKFVEIDLKPVCKHCYEK 368

  Fly   328 FPNELRRRL----RTAHEMTMKK 346
            .|.|.:|||    |.|.:...:|
Human   369 MPEEFKRRLAKREREAKDKDKQK 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stckNP_731242.1 LIM1_PINCH 21..79 CDD:188717 42/57 (74%)
LIM2_PINCH 82..133 CDD:188718 33/50 (66%)
LIM3_PINCH 146..206 CDD:188719 29/59 (49%)
LIM4_PINCH 212..265 CDD:188720 46/52 (88%)
LIM5_PINCH 273..326 CDD:188721 36/52 (69%)
LIMS1NP_001358423.1 LIM1_PINCH 72..130 CDD:188717 42/57 (74%)
LIM2_PINCH 133..184 CDD:188718 33/50 (66%)
LIM3_PINCH 197..247 CDD:188719 29/59 (49%)
LIM4_PINCH 253..306 CDD:188720 46/52 (88%)
LIM5_PINCH 314..367 CDD:188721 36/52 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165154967
Domainoid 1 1.000 118 1.000 Domainoid score I5856
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68428
Inparanoid 1 1.050 498 1.000 Inparanoid score I1384
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG51900
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 1 1.000 - - otm41954
orthoMCL 1 0.900 - - OOG6_103991
Panther 1 1.100 - - LDO PTHR24210
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5868
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1413.940

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