DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment stck and lmcd1

DIOPT Version :9

Sequence 1:	NP_731242.1	Gene:	stck / 40999	FlyBaseID:	FBgn0020249	Length:	348	Species:	Drosophila melanogaster
Sequence 2:	NP_957364.2	Gene:	lmcd1 / 394045	ZFINID:	ZDB-GENE-040426-1067	Length:	342	Species:	Danio rerio

Alignment Length:	112	Identity:	33/112 - (29%)
Similarity:	51/112 - (45%)	Gaps:	7/112 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    20 HCTRCADGFEPTEKIVNSN----GELWHTQCFVCAQCFRPFQDGIFYEFEGRKYCERDFHVLFAP 80
            :|:.|.......|.:|.::    ..|||..||||.:|.....|.|::..||...|.|.:.....|
Zfish   229 YCSGCGQLAAMDEPVVYADRAGYERLWHPACFVCGECGEALVDLIYFWKEGALLCGRHYCQSIRP 293

  Fly    81 CCNKCGEFVIGRVI--KAMSASWHPQCFRCQLCAKEL-ADCGFIKNQ 124
            .|..|.|.:...::  :|....||.:.|.|.||.::: .:||..|.|
Zfish   294 RCLGCDELIFSDMLLQEASGHVWHKEHFCCWLCGQDIRVECGCDKRQ 340

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
stck	NP_731242.1	LIM1_PINCH	21..79	CDD:188717	18/61 (30%)
		LIM2_PINCH	82..133	CDD:188718	14/46 (30%)
		LIM3_PINCH	146..206	CDD:188719
		LIM4_PINCH	212..265	CDD:188720
		LIM5_PINCH	273..326	CDD:188721
lmcd1	NP_957364.2	PET_testin	102..189	CDD:193604
		LIM1_Testin_like	230..287	CDD:188726	18/56 (32%)
		LIM	293..>326	CDD:295319	9/32 (28%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1704
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X39
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.810