DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment stck and Lmo7

DIOPT Version :9

Sequence 1:	NP_731242.1	Gene:	stck / 40999	FlyBaseID:	FBgn0020249	Length:	348	Species:	Drosophila melanogaster
Sequence 2:	XP_036014595.1	Gene:	Lmo7 / 380928	MGIID:	1353586	Length:	1807	Species:	Mus musculus

Alignment Length:	83	Identity:	25/83 - (30%)
Similarity:	40/83 - (48%)	Gaps:	20/83 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly   140 ITGRYVCQKCHGLIDE------EPLRFRGEVYHGYHFSCTACGTEL--DSTAREVKSRPGLAAND 196
            ::|:.||..|:.::.:      |.|   |..||.:.|.|.:||.:|  .|:..||:.|
Mouse  1732 VSGKRVCSYCNNILGKGAAMIIETL---GLSYHLHCFKCVSCGCDLGGSSSGAEVRIR------- 1786

  Fly   197 MNELYCLRCH--DKMGIP 212
            .::|||..|:  .|.|.|
Mouse  1787 NHQLYCNDCYLRFKSGRP 1804

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
stck	NP_731242.1	LIM1_PINCH	21..79	CDD:188717
		LIM2_PINCH	82..133	CDD:188718
		LIM3_PINCH	146..206	CDD:188719	19/67 (28%)
		LIM4_PINCH	212..265	CDD:188720	1/1 (100%)
		LIM5_PINCH	273..326	CDD:188721
Lmo7	XP_036014595.1	CH_LMO7	14..129	CDD:409126
		DUF4757	242..>314	CDD:406382
		DUF4757	655..802	CDD:406382
		fibronec_FbpA	<829..>930	CDD:411474
		PDZ	1114..1183	CDD:238080
		LIM	1738..1796	CDD:259829	19/67 (28%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1704
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900