DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stck and Pxn

DIOPT Version :10

Sequence 1:NP_731242.1 Gene:stck / 40999 FlyBaseID:FBgn0020249 Length:348 Species:Drosophila melanogaster
Sequence 2:XP_038945530.1 Gene:Pxn / 360820 RGDID:1305759 Length:1125 Species:Rattus norvegicus


Alignment Length:322 Identity:95/322 - (29%)
Similarity:133/322 - (41%) Gaps:81/322 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SKAEVVQAANMSLGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCAQCFRPFQDGIFYEFEGRK 68
            :|..|...|....||  |.:...|     ::|.:.|:.||.:.|||..|........|:|.:|:.
  Rat   880 NKLGVATVAKGVCGA--CKKPIAG-----QVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQP 937

  Fly    69 YCERDFHVLFAPCCNKCGEFVIGRVIKAMSASWHPQCFRCQLCAKELADCGFIKNQNRALCHECN 133
            |||:|:|.||:|.|..|...::.:|:.|:..:|||:.|.|       |.||              
  Rat   938 YCEKDYHSLFSPRCYYCNGPILDKVVTALDRTWHPEHFFC-------AQCG-------------- 981

  Fly   134 AKVKAEITGRYVCQKCHGLIDEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDMN 198
                                     .|.|.  .|:|        |.|..|               
  Rat   982 -------------------------AFFGP--EGFH--------EKDGKA--------------- 996

  Fly   199 ELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGHRHYEKRGLAYCET 263
              ||.:.:..|..|.||.|.|.|.|..::||...||.|.|||.:|..||:....:|..|..|||.
  Rat   997 --YCRKDYFDMFAPKCGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFEHDGQPYCEV 1059

  Fly   264 HYHQLFGNLCFVCNQVIGGDVFTALNKAWCVHHFACSVCDTKMTQKSKFYEYDEKPVCKKCY 325
            |||:..|:||..|.:.|.|...||:.|.:...||.|:.| .|...|..|.|.::||.|:.|:
  Rat  1060 HYHERRGSLCSGCQKPITGRCITAMAKKFHPEHFVCAFC-LKQLNKGTFKEQNDKPYCQSCF 1120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stckNP_731242.1 LIM1_PINCH 21..79 CDD:188717 19/57 (33%)
LIM2_PINCH 82..133 CDD:188718 12/50 (24%)
LIM3_PINCH 146..206 CDD:188719 9/59 (15%)
LIM4_PINCH 212..265 CDD:188720 23/52 (44%)
LIM5_PINCH 273..326 CDD:188721 19/53 (36%)
PxnXP_038945530.1 Paxillin 121..320 CDD:460962
DUF5585 <410..806 CDD:465521
LIM1_Paxillin_like 892..944 CDD:259830 19/58 (33%)
LIM2_Paxillin 951..1002 CDD:188791 21/123 (17%)
LIM3_Paxillin_like 1010..1062 CDD:188724 23/51 (45%)
LIM4_Paxillin 1069..1120 CDD:188795 18/51 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.