DRSC/TRiP Functional Genomics Resources

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Protein Alignment stck and PRICKLE1

DIOPT Version :9

Sequence 1:NP_731242.1 Gene:stck / 40999 FlyBaseID:FBgn0020249 Length:348 Species:Drosophila melanogaster
Sequence 2:NP_001138353.1 Gene:PRICKLE1 / 144165 HGNCID:17019 Length:831 Species:Homo sapiens


Alignment Length:257 Identity:57/257 - (22%)
Similarity:81/257 - (31%) Gaps:80/257 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MSLGAMH--CTRCADGFEPTEKIVNSN----GELWHTQCFVCAQCFRPFQDGIFYEFEGRKYCER 72
            :|...||  |.:|.......|..|.::    |..||..||||..|.....|.|::..:|:.:|.|
Human   117 LSRAVMHAVCEQCGLKINGGEVAVFASRAGPGVCWHPSCFVCFTCNELLVDLIYFYQDGKIHCGR 181

  Fly    73 DFHVLFAPCCNKCGEFVIG-RVIKAMSASWHPQCFRCQLCAKELADCGFIKNQNRALCHECNAKV 136
            ....|..|.|:.|.|.:.. ...:|....||.:.|.|..|...|....:|....|..|..|...:
Human   182 HHAELLKPRCSACDEIIFADECTEAEGRHWHMKHFCCLECETVLGGQRYIMKDGRPFCCGCFESL 246

  Fly   137 KAEITGRYVCQKCHGLIDEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNELY 201
            .||                                                             |
Human   247 YAE-------------------------------------------------------------Y 250

  Fly   202 CLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEH--FVCAKCEKPFLGHRHYEKRGLAYC 261
            |..|.:.:|          ::...:|..|:|||...  |.||:|:...||.....|:|..||
Human   251 CETCGEHIG----------VDHAQMTYDGQHWHATEACFSCAQCKASLLGCPFLPKQGQIYC 302

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
stckNP_731242.1 LIM1_PINCH 21..79 CDD:188717 18/61 (30%)
LIM2_PINCH 82..133 CDD:188718 13/51 (25%)
LIM3_PINCH 146..206 CDD:188719 2/59 (3%)
LIM4_PINCH 212..265 CDD:188720 15/52 (29%)
LIM5_PINCH 273..326 CDD:188721