DRSC/TRiP Functional Genomics Resources

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Protein Alignment stck and lims1

DIOPT Version :9

Sequence 1:NP_731242.1 Gene:stck / 40999 FlyBaseID:FBgn0020249 Length:348 Species:Drosophila melanogaster
Sequence 2:XP_012812021.1 Gene:lims1 / 100216119 XenbaseID:XB-GENE-967923 Length:397 Species:Xenopus tropicalis


Alignment Length:339 Identity:217/339 - (64%)
Similarity:261/339 - (76%) Gaps:15/339 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ANMSLGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCAQCFRPFQDGIFYEFEGRKYCERDFHV 76
            ||....|: |.||..||.|:||||||||||:|.|||||||||:.|.:|:|||||||||||.||.:
 Frog    65 ANALANAI-CERCRSGFAPSEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 128

  Fly    77 LFAPCCNKCGEFVIGRVIKAMSASWHPQCFRCQLCAKELADCGFIKNQNRALCHECNAKVKAEIT 141
            ||||||::||||:||||||||:.||||:||||.:|.:.|||.||:||..|.||..|:.:.||...
 Frog   129 LFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDICQQVLADIGFVKNAGRHLCRPCHNREKARGL 193

  Fly   142 GRYVCQKCHGLIDEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNELYCLRCH 206
            |:|:|||||.:|||:||.|:.:.||..||:|..||.||.:.|||:|          .|||||.||
 Frog   194 GKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELK----------GELYCLPCH 248

  Fly   207 DKMGIPICGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGHRHYEKRGLAYCETHYHQLFGN 271
            ||||:|||||||||||.|||.|:||.||||||||||||||||||||||::|||||||||:||||:
 Frog   249 DKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 313

  Fly   272 LCFVCNQVIGGDVFTALNKAWCVHHFACSVCDTKMTQKSKFYEYDEKPVCKKCYDRFPNELRRRL 336
            :||.||:||.|||.:||||||||:.||||.|:||:|.|.||.|.|.||.||.||::.|:|.:|||
 Frog   314 VCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKHKFVEIDLKPTCKHCYEKLPDEFKRRL 378

  Fly   337 ----RTAHEMTMKK 346
                :.|.:...||
 Frog   379 SRQSKEAKDKEKKK 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stckNP_731242.1 LIM1_PINCH 21..79 CDD:188717 42/57 (74%)
LIM2_PINCH 82..133 CDD:188718 32/50 (64%)
LIM3_PINCH 146..206 CDD:188719 29/59 (49%)
LIM4_PINCH 212..265 CDD:188720 46/52 (88%)
LIM5_PINCH 273..326 CDD:188721 35/52 (67%)
lims1XP_012812021.1 LIM1_PINCH 73..131 CDD:188717 42/57 (74%)
LIM2_PINCH 134..185 CDD:188718 32/50 (64%)
LIM3_PINCH 198..248 CDD:188719 29/59 (49%)
LIM4_PINCH 254..307 CDD:188720 46/52 (88%)
LIM5_PINCH 315..368 CDD:188721 35/52 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 116 1.000 Domainoid score I5925
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68428
Inparanoid 1 1.050 498 1.000 Inparanoid score I1344
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 1 1.000 - - FOG0000055
OrthoInspector 1 1.000 - - oto104909
Panther 1 1.100 - - LDO PTHR24210
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5868
SonicParanoid 1 1.000 - - X39
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.190

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