DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment stck and lmcd1

DIOPT Version :9

Sequence 1:	NP_731242.1	Gene:	stck / 40999	FlyBaseID:	FBgn0020249	Length:	348	Species:	Drosophila melanogaster
Sequence 2:	XP_012815919.1	Gene:	lmcd1 / 100124907	XenbaseID:	XB-GENE-966902	Length:	352	Species:	Xenopus tropicalis

Alignment Length:	149	Identity:	39/149 - (26%)
Similarity:	64/149 - (42%)	Gaps:	18/149 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly   178 ELDSTAREVKSRPGLAANDMNELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCAK 242
            |.:.||:|        |.:..|.:|..|..    |:.........||  ....|.||...|:|.:
Frog   213 ETNGTAKE--------AFEKTEYFCEMCQQ----PLSRDAPAVYAER--AGFDKQWHPACFMCCQ 263

  Fly   243 CEKPFLGHRHYEKRGLAYCETHYHQLFGNLCFVCNQVIGGDVFTALNKA-WCVHHFACSVCDTKM 306
            |.:|.:...::.:....:|..||.:.....|..|:|:|..:.:..::.. |..|||:|:.||  .
Frog   264 CREPLVNLIYFWRNNSLWCGRHYCESERPRCAGCDQMIFSEDYEQVDSGFWHRHHFSCTDCD--Q 326

  Fly   307 TQKSKFYEYDE-KPVCKKC 324
            |...|.|..|: :|:|..|
Frog   327 TLSGKPYVLDKAQPLCDLC 345

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
stck	NP_731242.1	LIM1_PINCH	21..79	CDD:188717
		LIM2_PINCH	82..133	CDD:188718
		LIM3_PINCH	146..206	CDD:188719	7/27 (26%)
		LIM4_PINCH	212..265	CDD:188720	11/52 (21%)
		LIM5_PINCH	273..326	CDD:188721	18/54 (33%)
lmcd1	XP_012815919.1	PET_testin	111..198	CDD:193604
		LIM1_Testin_like	229..286	CDD:188726	13/62 (21%)
		LIM	292..345	CDD:351770	17/54 (31%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X39
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	2.000