DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg13 and atg-13

DIOPT Version :9

Sequence 1:NP_649796.1 Gene:Atg13 / 40998 FlyBaseID:FBgn0261108 Length:523 Species:Drosophila melanogaster
Sequence 2:NP_498782.1 Gene:atg-13 / 176150 WormBaseID:WBGene00017045 Length:443 Species:Caenorhabditis elegans


Alignment Length:542 Identity:117/542 - (21%)
Similarity:213/542 - (39%) Gaps:164/542 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KFIKFLVLKSTQVVVQSRLGEKMQTQCNPLAGS--DWFNIAVQDHPEVLDETKRALNLKTGESIL 77
            |::||..::..|.::|||||::::::|.|.:.:  ||||:.:.:..|:....|.  |:|:...: 
 Worm    10 KWLKFFSVRMVQSIIQSRLGDEIESKCVPYSENAVDWFNMRIDELGEISAYLKS--NIKSYPPV- 71

  Fly    78 QRLPLCVEISLKTTEGDQMVLEVWSLDLLQPQNGASPATNDLNPEGQTLKAAHAIYNRMGIMLKS 142
              ..|.:|..|.|..|..:.||.|.|       .:|..|:|.        :.:.:|:.|..:|:|
 Worm    72 --GTLTLEFLLYTPSGQLLPLEAWIL-------SSSEGTDDC--------SRNELYHDMSTLLRS 119

  Fly   143 LISLTRTTPAYKL-SRRQCPDSYGIFYRIYVDRPQVHTLGEGHKHVKIGQLSTIVGSLVMSVAYR 206
            .|...|.||.::| .::|..:::.|.||:: :......:|:|.|..|||:|.:..|::.:.:.||
 Worm   120 AIVSARMTPMHRLYVKKQHLETFVIMYRVF-ENDISSDMGKGKKTRKIGELVSKFGNISLDLHYR 183

  Fly   207 TKLTISPTAAQSESNTIMLKSDHF-RPATDANTPGN--QQQTQNG--TVVAKKLGLGALNPAQGT 266
            |.:                   || .|.....||..  :::..:|  |||.:.:....::.....
 Worm   184 TSM-------------------HFEEPEIAPVTPVEDVEEEIDDGEKTVVDENIQTRTVSECVPI 229

  Fly   267 ADRRFIDIEKPLRPGAFTDMGKLKQYTEDDFVLPETPPFEWLLRGRGSVESLNRLDNNS---VAS 328
            ||.:                   |:                  :..|||||.....:::   .|.
 Worm   230 ADAK-------------------KR------------------KASGSVESATSAGSSTSREAAP 257

  Fly   329 VNISNNNNSTQDSKFNQISNLNNNSAGFKSFEKNSENSVS-------PIKSLLIPA--SATATYR 384
            ..|...:.|::||:.:.:.|         |:|::.:.|::       |..:||..|  .|..|.:
 Worm   258 RFILGQSTSSEDSRHSDVQN---------SYEEDHKPSLADLRNHSFPFVNLLQSAYNPANGTKK 313

  Fly   385 HHSEPSLQPP---PDD-----------------DNLL----KELHFPFAS------PTSHVNDLA 419
            :.|...|..|   |:|                 |.::    ::...|..|      ...|.|.|:
 Worm   314 NSSSTCLNSPKSTPEDKEPTIEKVAESFRAAKIDEVVFEEDEDEELPLDSMELSEDSFVHFNQLS 378

  Fly   420 KFYRECYHAPPLKGLNELQAEISSISSTPPASSGSGGVAACGPTAAATAIATSSADASAMDDLSR 484
            .|    ..||.|.  |||...:..: .|.|..:.||.:..|..                  ||..
 Worm   379 DF----GGAPSLG--NELGDYLKQL-KTAPDMTESGDIDICNM------------------DLKT 418

  Fly   485 QLEQFETSLEDYD---KLVSQF 503
            :||:..:...:::   |.|:.|
 Worm   419 ELEKISSQTANFNNFLKHVNSF 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg13NP_649796.1 ATG13 22..207 CDD:287051 50/187 (27%)
atg-13NP_498782.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166603
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3874
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004173
OrthoInspector 1 1.000 - - oto18708
orthoMCL 1 0.900 - - OOG6_107732
Panther 1 1.100 - - LDO PTHR13430
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2414
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.770

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