DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arl2 and Trim23

DIOPT Version :10

Sequence 1:NP_476886.1 Gene:Arl2 / 40993 FlyBaseID:FBgn0004908 Length:184 Species:Drosophila melanogaster
Sequence 2:NP_001348467.1 Gene:Trim23 / 81003 MGIID:1933161 Length:574 Species:Mus musculus


Alignment Length:171 Identity:69/171 - (40%)
Similarity:99/171 - (57%) Gaps:9/171 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 EMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNY 80
            |:|::.||||.|||||||.:...:......||:|||::|:|:......:|||||:..||..|::|
Mouse   404 EIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHY 468

  Fly    81 FESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLE 145
            :.:|..:|:||||:.|.|:.....||..||.|:.|..|.||:..||||:.||||..||.|:|.|.
Mouse   469 YLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLH 533

  Fly   146 DITT-HHWLVAGVSAVTGEKLLSSMDWL--------IADIA 177
            .:.. ..|.:.|..|.:|..|...:|||        :.|:|
Mouse   534 KLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVLDVA 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl2NP_476886.1 Arl2 3..175 CDD:206720 67/167 (40%)
Trim23NP_001348467.1 mRING-HC-C3HC3D_TRIM23_C-IX 28..77 CDD:438307
Bbox2_TRIM23_C-IX_rpt1 123..172 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 174..223 CDD:380832
CC_brat-like 226..370 CDD:475168
ARF-like 390..574 68/169 (40%)
ARD1 406..574 CDD:206723 67/167 (40%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.