DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxm and Pax4

DIOPT Version :10

Sequence 1:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_113987.1 Gene:Pax4 / 83630 RGDID:620433 Length:349 Species:Rattus norvegicus


Alignment Length:373 Identity:122/373 - (32%)
Similarity:166/373 - (44%) Gaps:70/373 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIG 77
            ||||||:||||||||..||.:||:||..|:|||||||.|:||:|||||||.||:.||.:.|..||
  Rat     9 VNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILGRYYRTGVLEPKGIG 73

  Fly    78 GSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSISRILR-----NKLG 137
            |||||:.||.||..|.:||...|.:|||||:.:|.:||:|.:...||||||:|:||     .:| 
  Rat    74 GSKPRLATPAVVARIAQLKDEYPALFAWEIQRQLCAEGLCTQDKAPSVSSINRVLRALQEDQRL- 137

  Fly   138 SLGH--QHTPGTVMGSGSSSGGGSVSSNGGQNNGTSASNNINLSNLGNPGGGP---------HHP 191
               |  |.....|:.....|...:..:..|.:.|||..|.    .:.:||...         .:|
  Rat   138 ---HWTQLRSPAVLAPALPSPHSNCEAPRGPHPGTSHRNR----TIFSPGQAEALEKEFQRGQYP 195

  Fly   192 HHHHHHQSAAAAASAHHV----HAHAHAHAHLYNSI-YQPYSAAAAYSMKTPCGSPSPPQGAGGQ 251
            ......:.|||.:.....    .::..|.......: ::.....|:..:..|..||.........
  Rat   196 DSVVRGKLAAATSLPEDTVRVWFSNRRAKWRRQEKLKWETQMPGASQDLMVPKDSPGIISAQQSP 260

  Fly   252 GSVPHPHQLRSVAAAAAAAHWPSSHSVSDILAHHQAVALRASCQVGVGVGGMGGMGSTVSPLPMT 316
            ||||      |.|........||                  .||:..|.........|.|...:.
  Rat   261 GSVP------SAALPVLEQLNPS------------------FCQLCWGAVPDRCSSDTTSQACLQ 301

  Fly   317 P-------SPVAGTA---------GGQPLLDCEGGAGQQSPYNYYMYF 348
            |       .|||.::         ...|:....||.| |:|..||:::
  Rat   302 PYWECHSLLPVASSSYMEFAWPCLTTHPVHHLIGGPG-QAPSTYYLHW 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxmNP_001036687.1 PAX 10..133 CDD:128645 74/119 (62%)
Pax4NP_113987.1 PAX 5..129 CDD:128645 74/119 (62%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 8..64 40/54 (74%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 83..131 24/47 (51%)
Homeodomain 172..227 CDD:459649 8/58 (14%)
Transcription repression 278..349 17/72 (24%)

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