DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Poxm and pax5

DIOPT Version :9

Sequence 1:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster
Sequence 2:XP_005170979.1 Gene:pax5 / 60636 ZFINID:ZDB-GENE-001030-2 Length:423 Species:Danio rerio


Alignment Length:434 Identity:147/434 - (33%)
Similarity:194/434 - (44%) Gaps:111/434 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDPESQCPQ-------YGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCV 58
            ||.:.:.|.       :|.|||||||||||||||:..|.||||||..|:||||||||||||||||
Zfish     1 MDLDQKGPSLRIGRSGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCV 65

  Fly    59 SKILARYHETGSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVP 123
            ||||.||:|||||.||.||||||:|.|||||:.|.:.|:::|.:||||||||||:|.:||..:||
Zfish    66 SKILGRYYETGSIRPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAERVCDNDSVP 130

  Fly   124 SVSSISRILRNKLGSLGHQHTPGTVMGSGSSSGGGSVSSNGGQNNGTSASNNINLSNLGNPGGGP 188
            |||||:||:|.|:     |..||.         .|:||:                          
Zfish   131 SVSSINRIIRTKV-----QQPPGQ---------SGAVSA-------------------------- 155

  Fly   189 HHPHHHHHHQSAAAAASAHHVHAHAHAHAHLYNSIYQPYSAAAAYSMKTPCGSPSPPQGAGG--- 250
                  |:..|..|......|.:.|...::..:.|....|.|.|...|........|...|.   
Zfish   156 ------HNLASTVAVTQVSAVTSDAAGSSYSISGILGISSPADASKRKRDDPLQDSPLANGHSHS 214

  Fly   251 ---------QGSVPHPHQLRSVAAAAAAAHWPSSHSVSDILAHHQAVALRASCQVGVGVGGMGGM 306
                     :|.:..|.||..:........:|..:.:.|.:::..:.....|....: .||:..|
Zfish   215 GRDFLRKQMRGELFTPQQLEVLDHVFDRQPFPDIYPIPDSISYKPSQTTDYSAMASL-AGGLEEM 278

  Fly   307 ------------GSTV----------------SPLPMTPSPVAGTAGGQ---PLLD--CEGGAGQ 338
                        ||||                :.||..|..|..|..|.   |.|.  ..||...
Zfish   279 KNSLANQTGAELGSTVAGPQSYPLVSGRDLASTTLPGYPPHVPPTGQGSYSTPSLTGMVPGGDFS 343

  Fly   339 QSPYNYYMY--------FQNGG-MHHHHHHGGMMA---AGATGL 370
            .|||::..|        |.|.. :.....:|.::.   |.::||
Zfish   344 GSPYSHPQYSTYNESWRFANPSLLVFQQEYGSLLGSERAASSGL 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxmNP_001036687.1 PAX 10..133 CDD:128645 90/122 (74%)
pax5XP_005170979.1 PAX 16..140 CDD:128645 90/123 (73%)
Pax2_C 280..403 CDD:289189 24/108 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.