DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxm and PAX6

DIOPT Version :10

Sequence 1:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_001355839.1 Gene:PAX6 / 5080 HGNCID:8620 Length:503 Species:Homo sapiens


Alignment Length:412 Identity:142/412 - (34%)
Similarity:182/412 - (44%) Gaps:110/412 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIG 77
            |||||||||||||||::||.:|||||..|.|||||||.|:||:|||||||.||:|||||.|.|||
Human    89 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIG 153

  Fly    78 GSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSISRILRN-------- 134
            ||||||.||:||:.|.:.|:..|.||||||||||||||:|...|:||||||:|:|||        
Human   154 GSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQM 218

  Fly   135 -------KL----GSLGHQHT-----PGTVM-------GSGSSSGGG----SVSSNGG------- 165
                   ||    |..|...|     |||.:       |.....|||    |:||||.       
Human   219 GADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQM 283

  Fly   166 --------QNNGTSASNNINLSNLGNPGGGPHHPHHHHHHQSAA--------------------- 201
                    |.|.||.:.. .:..|.......|:|......:.||                     
Human   284 RLQLKRKLQRNRTSFTQE-QIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR 347

  Fly   202 -----------AAASAHHVHAHAHAHAHLYNSIYQPYSAAAAYSMKTPCG----------SPSPP 245
                       |:.:..|:...:.....:|..|.||.:..::::..:..|          |..||
Human   348 REEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPP 412

  Fly   246 QGAGGQGS-----VPHPHQLRSVAAAAAAAHWPSSHSVSDILAHHQAVALRASCQVGVGVGGMGG 305
            ..:....:     .|.|.|..|.:.....:...:..|.......|.        |..:....||.
Human   413 MPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHM--------QTHMNSQPMGT 469

  Fly   306 MGST----VSPLPMTPSPVAGT 323
            .|:|    :||....|..|.|:
Human   470 SGTTSTGLISPGVSVPVQVPGS 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxmNP_001036687.1 PAX 10..133 CDD:128645 87/119 (73%)
PAX6NP_001355839.1 PAX 85..209 CDD:128645 87/119 (73%)
Homeodomain 293..348 CDD:459649 8/55 (15%)

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