DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxm and otp

DIOPT Version :10

Sequence 1:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_001286654.1 Gene:otp / 37364 FlyBaseID:FBgn0015524 Length:416 Species:Drosophila melanogaster


Alignment Length:293 Identity:61/293 - (20%)
Similarity:81/293 - (27%) Gaps:110/293 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 GAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPS---VSSISRILRNK 135
            |..||.:..|....:.....:|.|..|       ....|:.|:....|:.|   ..|......|.
  Fly   213 GMFGGDRWSVGVNPMTAGFGQLNQSSP-------LSSSLNSGLNSGINMGSALGAGSYQHYGLNA 270

  Fly   136 LG-SLGHQHTPGTVMGSGSSSGGGSVSSNGGQNN------------GTSASNNINLSNLGNPGGG 187
            || |:.:||:.|.|  |...||..|.::....|:            ..|:.|.:|    |.|   
  Fly   271 LGDSMMYQHSVGGV--SCGPSGSPSATTPPNMNSCSSVTPPPLSAQPNSSQNELN----GEP--- 326

  Fly   188 PHHPHHHHHHQSAAAAASAHHVHAHAHAHAHLYNSIYQPYSAAAAYSMKTPCGSPSPPQGAGGQG 252
              .|.|....|..       |.|.....|.|                  .|...|:|.|   .|.
  Fly   327 --MPLHQQQQQQT-------HQHQQQQTHQH------------------HPMAPPTPTQ---QQQ 361

  Fly   253 SVPHPHQLRSVAAAAAAAHWPSSHSVSDILAHHQAVALRASCQVGVGVGGMGGMGSTVSPLPMTP 317
            .:|...|             ..|...:|.|  |...|||                ...|.|...|
  Fly   362 QLPQSMQ-------------SPSDGANDTL--HSIAALR----------------RRASELNAIP 395

  Fly   318 SPVAGTAGGQPLLDCEGGAGQQSPYNYYMYFQN 350
            |.:                 |.:|:||..|..|
  Fly   396 SYL-----------------QMAPHNYEHYNSN 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxmNP_001036687.1 PAX 10..133 CDD:128645 12/61 (20%)
otpNP_001286654.1 Homeodomain 117..168 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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