DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxm and Pax9

DIOPT Version :9

Sequence 1:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_001034628.1 Gene:Pax9 / 362741 RGDID:1560838 Length:342 Species:Rattus norvegicus


Alignment Length:403 Identity:168/403 - (41%)
Similarity:196/403 - (48%) Gaps:134/403 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PQYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 72
            |.:|||||||||||||||||||.|:||||||:||||||||||||||||||||||||||:||||||
  Rat     3 PAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSIL 67

  Fly    73 PGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSISRILRNKLG 137
            ||||||||||||||.||.:||..|||||||||||||||||::|:|||.|||||||||||||||:|
  Rat    68 PGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG 132

  Fly   138 SLGHQHTPGTVMGSGSSSGGGSVSSNGGQNNGTSASNNINLSNLGNPGGGPHHPHHHHHHQSAAA 202
            :|..|                                             .|:..:..|..:...
  Rat   133 NLAQQ---------------------------------------------GHYDSYKQHQPAPQP 152

  Fly   203 AASAHHVHAHAHAHAHLYNSIYQPYSAAAAYSMKTPCGSPSPPQGAGGQGSVPHPHQLRSVAAAA 267
            |...:|::::.           .|.:|||| .:.||.|.|:.|      |||..|..        
  Rat   153 ALPYNHIYSYP-----------SPITAAAA-KVPTPPGVPAIP------GSVALPRT-------- 191

  Fly   268 AAAHWPSSHSVSDILA---------------HHQAV-------------------------ALRA 292
                |||||||:|||.               |...|                         ||..
  Rat   192 ----WPSSHSVTDILGIRSITDQGVSDSSPYHSPKVEEWSSLGRNNFSAAAPHAVNGLEKGALEQ 252

  Fly   293 SCQVGVGVGGMGGMGSTVSPLPMTPSPVAGTAGGQPLLDCEGGAGQQSPYNYYMYFQNGGMHHHH 357
            ..:.|....|:..:.|.||...|.|.|.               ..|.|||..|....:|.:..| 
  Rat   253 EAKYGQAPNGLPAVSSFVSASSMAPYPT---------------PAQVSPYMTYSAAPSGYVAGH- 301

  Fly   358 HHGGMMAAGATGL 370
               |...||:|.|
  Rat   302 ---GWQHAGSTPL 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxmNP_001036687.1 PAX 10..133 CDD:128645 108/122 (89%)
Pax9NP_001034628.1 PAX 6..131 CDD:238076 111/124 (90%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 7..63 51/55 (93%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 82..130 38/47 (81%)
Interaction with KDM5B. /evidence=ECO:0000250 168..189 12/27 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 225 1.000 Domainoid score I2460
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 247 1.000 Inparanoid score I3179
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1339212at2759
OrthoFinder 1 1.000 - - FOG0003351
OrthoInspector 1 1.000 - - oto96227
orthoMCL 1 0.900 - - OOG6_106145
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2237
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.970

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