DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxm and Pax3

DIOPT Version :10

Sequence 1:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus


Alignment Length:419 Identity:142/419 - (33%)
Similarity:180/419 - (42%) Gaps:111/419 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 GEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA 75
            |.||||||||:|||||||..|.:|||:|..|||||.||||||||||||||||.||.|||||.|||
Mouse    36 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGA 100

  Fly    76 IGGSKPR-VTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSISRILRNKLGSL 139
            ||||||: ||||.|...|.|.|:.:||:|:|||||:||.:.:||:..||||||||||||:|.|. 
Mouse   101 IGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGK- 164

  Fly   140 GHQ------------------HTPGTVMGSGSSS----GGGSVSSNGG------QNNGTSASNNI 176
            |.:                  |:...::...:|:    .|..:.|...      |....:.....
Mouse   165 GEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAE 229

  Fly   177 NLSNLGNPGGGPHHPHHHHHHQSAAAA---------------------ASAHHVHAHAH------ 214
            .|..|.......|:|..:...:.|..|                     |.|:.:.|..|      
Mouse   230 QLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGF 294

  Fly   215 --------AHAHLYNSIYQPYSAAAAYS-----MKTPCGSPSPPQGAGGQGSVPHPHQLRSVAAA 266
                    ....|..:.|||.|...|.|     :..|  .|.||       |..|...:.|.|.:
Mouse   295 PPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRP--QPLPP-------STVHQSTIPSNADS 350

  Fly   267 AAAAHWPSSHSVSDILAHHQAVALRASCQVGVGVGGMGGMGSTVSPLPMTPS-PVAGTAGG---- 326
            ::|...||:..                        |......:..| |..|| |:..|.|.    
Mouse   351 SSAYCLPSTRH------------------------GFSSYTDSFVP-PSGPSNPMNPTIGNGLSP 390

  Fly   327 --QPLLDCEGGAGQQSPYNYYMYFQNGGM 353
              ..||...||...|...:|.:....||:
Mouse   391 QVMGLLTNHGGVPHQPQTDYALSPLTGGL 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxmNP_001036687.1 PAX 10..133 CDD:128645 88/122 (72%)
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645 88/122 (72%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 43/55 (78%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 28/47 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 6/62 (10%)
Homeodomain 220..276 CDD:459649 6/55 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 14/50 (28%)
Pax7 347..391 CDD:403540 12/68 (18%)
Blue background indicates that the domain is not in the aligned region.

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