DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRpL1 and mrpl-1

DIOPT Version :9

Sequence 1:NP_524275.1 Gene:mRpL1 / 40980 FlyBaseID:FBgn0037566 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_501257.1 Gene:mrpl-1 / 177549 WormBaseID:WBGene00017997 Length:377 Species:Caenorhabditis elegans


Alignment Length:362 Identity:111/362 - (30%)
Similarity:177/362 - (48%) Gaps:33/362 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RALALRQSTVEPLRLLHLSAVSEAARKGTREKARK-----KKVKVEVKKVGFIPHNQRNKKINVK 68
            |..||:|:.....:|      ....::..:|.|||     :|:.:...|....|..|...::|  
 Worm    30 RKRALKQTITRQQKL------ERRMKREEKEAARKQYSFMEKINIRRMKNLLSPSQQFPGRLN-- 86

  Fly    69 RADKHVDD--SWKQVPKDDCYVGRYYRWPVYSVQEAIQCHRETHHPSMYNVPNAPLNLDIELNMQ 131
                 :||  :..:.|..|.::..:::...|:|.||:..|||...||:||.||||:.|.:||||.
 Worm    87 -----IDDEANLPEKPTLDVFIKSHFKTQYYTVSEALDMHRELQSPSIYNNPNAPIRLRLELNMT 146

  Fly   132 AEKITRFVDNFQRMAMIPHKFDHGEERKIIVFTKGNNEVLE--AREAGASLVGGVELIKDITSGE 194
            .|:.|:.|.....:..:||.|:|.|:|.|:.|  .|:..|:  |.|:||.:..|.:.||.|..|:
 Worm   147 TERQTKMVTGSDEIVPVPHPFNHNEKRTILAF--ANDVKLQELAVESGAEMALGQDTIKKIIKGQ 209

  Fly   195 LLLSDYQYVIAHPNILAELVALRGLMKRKFPNPKSETLGTNLAEMIVKFSSGISYSAAKDEYQQN 259
            ....||.:.::|.::.:.::.|||::|.:||...:..||.||.|:|.||.:|:..:...|.....
 Worm   210 FRTDDYDFCVSHSDMGSSILPLRGILKMRFPTRANGGLGENLPELIEKFKNGVKLNIKGDPVYPI 274

  Fly   260 FGLITASVGTLDMDVQKLEENIKFLLQDINTMRPKREGRFITRVLLKSPPSSEQLKID--PFVYV 322
            :||....||.|.|..:.:|.||..::......|....|.|:.|.||.:.|..|...||  |::.:
 Worm   275 WGLSDCVVGRLSMPNEHIEANIATVIAAACAHRNPALGSFVNRALLMTIPGEENYAIDVKPWIPI 339

  Fly   323 P-----EMWDKSTAKVKRDGAKK--QTEPAEPQEAVA 352
            |     |..:|...|.|:...||  .|:...|..|||
 Worm   340 PTEEEIEKIEKRKNKKKKKDEKKTEDTDDVAPVVAVA 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL1NP_524275.1 rplA_mito 97..246 CDD:273480 59/150 (39%)
mrpl-1NP_501257.1 Ribosomal_L1 112..261 CDD:294228 59/150 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160161173
Domainoid 1 1.000 101 1.000 Domainoid score I4366
eggNOG 1 0.900 - - E1_COG0081
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H137775
Inparanoid 1 1.050 161 1.000 Inparanoid score I2859
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG50176
OrthoDB 1 1.010 - - D1432931at2759
OrthoFinder 1 1.000 - - FOG0006284
OrthoInspector 1 1.000 - - oto18374
orthoMCL 1 0.900 - - OOG6_100942
Panther 1 1.100 - - LDO PTHR23105
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4035
SonicParanoid 1 1.000 - - X13500
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.800

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